Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0914
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21317-6|AAA62527.1|  313|Caenorhabditis elegans Hypothetical pr...    42   5e-04
Z70686-10|CAD21656.1|  533|Caenorhabditis elegans Hypothetical p...    29   2.9  
Z70683-8|CAD21626.1|  533|Caenorhabditis elegans Hypothetical pr...    29   2.9  

>U21317-6|AAA62527.1|  313|Caenorhabditis elegans Hypothetical
           protein B0495.8a protein.
          Length = 313

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 16/27 (59%), Positives = 21/27 (77%)
 Frame = +1

Query: 7   CPKIHDLALRADYEIASKTKDYFYDID 87
           C K+H+ A +ADYE A K KD+FYD+D
Sbjct: 58  CRKVHEPAHKADYERAQKEKDHFYDVD 84


>Z70686-10|CAD21656.1|  533|Caenorhabditis elegans Hypothetical
           protein F13B12.6 protein.
          Length = 533

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
 Frame = +1

Query: 301 EHLXAFIADXDRRTTAXKQRLAETHEELSAEVTEKANAAMNX-QSK*GXNWLGLXHSEKX 477
           E L A + D  ++    + R  +  +  +AE   +    MN  Q K G  WL     E  
Sbjct: 15  EELLAALDDDQKQLLFCQMRSEQVRKWEAAEADFEKTGPMNRKQKKKGLRWLTGVDGEVW 74

Query: 478 VWSMXVXINGK-IDELXTKES 537
           VW M      K IDE+  +E+
Sbjct: 75  VWVMGDHEKDKTIDEILEEEN 95


>Z70683-8|CAD21626.1|  533|Caenorhabditis elegans Hypothetical
           protein F13B12.6 protein.
          Length = 533

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
 Frame = +1

Query: 301 EHLXAFIADXDRRTTAXKQRLAETHEELSAEVTEKANAAMNX-QSK*GXNWLGLXHSEKX 477
           E L A + D  ++    + R  +  +  +AE   +    MN  Q K G  WL     E  
Sbjct: 15  EELLAALDDDQKQLLFCQMRSEQVRKWEAAEADFEKTGPMNRKQKKKGLRWLTGVDGEVW 74

Query: 478 VWSMXVXINGK-IDELXTKES 537
           VW M      K IDE+  +E+
Sbjct: 75  VWVMGDHEKDKTIDEILEEEN 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,722,251
Number of Sequences: 27780
Number of extensions: 162054
Number of successful extensions: 244
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)