Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0914
         (659 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55420.1 68414.m06339 DC1 domain-containing protein contains ...    29   3.6  
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ...    28   4.8  
At5g17440.1 68418.m02046 LUC7 N_terminus domain-containing prote...    28   6.3  
At3g03340.1 68416.m00332 LUC7 N_terminus domain-containing prote...    27   8.4  
At1g55440.1 68414.m06341 DC1 domain-containing protein contains ...    27   8.4  

>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 725

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 142 VNIXYFNFNKKKCSYLYSHQCH-RNNLWSWKLFHSPPVEPD 23
           VN   ++ NK+ C Y    +C  RN++W  K     P EPD
Sbjct: 326 VNYGQYSCNKE-CHYAVHSKCATRNDVWDGKDLDGVPEEPD 365


>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 661

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -2

Query: 142 VNIXYFNFN-KKKCSYLYSHQCH-RNNLWSWKLFHSPPVEPD 23
           V++ Y  ++  K+C Y    +C  RN++W  K     P EPD
Sbjct: 285 VDVNYGQYSCDKECHYAVHSKCATRNDVWDGKDLDGVPEEPD 326


>At5g17440.1 68418.m02046 LUC7 N_terminus domain-containing protein
           contains Pfam domain PF03194: Protein of unknown
           function, DUF259
          Length = 404

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 1   GECPKIHDLALRADYEIA 54
           G CPK+H L LR +Y+ A
Sbjct: 54  GPCPKVHSLQLRKEYKDA 71


>At3g03340.1 68416.m00332 LUC7 N_terminus domain-containing protein
           contains Pfam domain PF03194: LUC7 N_terminus
          Length = 402

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 1   GECPKIHDLALRADYEIA 54
           G CPK+H L LR +Y  A
Sbjct: 54  GPCPKVHSLQLRKEYREA 71


>At1g55440.1 68414.m06341 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 653

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -2

Query: 142 VNIXYFNFNK-KKCSY-LYSHQCHRNNLWSWKLFHSPPVEPD 23
           V++ Y  ++  K C Y ++SH   RN++W  +     P EPD
Sbjct: 277 VDVNYGQYSCIKGCHYAVHSHCATRNDVWDGEDLEGVPEEPD 318


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,006,877
Number of Sequences: 28952
Number of extensions: 147118
Number of successful extensions: 274
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)