Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0911
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb...    27   3.3  
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    25   7.6  

>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 173 RVWRFGKYTIKYNSKRFYSY 114
           +VWRF +Y +K  + +F+S+
Sbjct: 414 QVWRFQQYKVKNTNDKFFSF 433


>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +2

Query: 149 CIYQIATHVSLLENIIILIK*YLEASNVISFHYVNMSNYLIFLLAVIILVEKE 307
           C+  I   V++  N   ++  Y    N++   YV++ N LI LLA +I+   E
Sbjct: 91  CLRAILNIVTICSNSYSILVNYGFILNMVHM-YVHVFNILILLLAPVIIFTAE 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,203,472
Number of Sequences: 5004
Number of extensions: 38149
Number of successful extensions: 46
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)