Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0911
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81513-7|CAB04179.1|  319|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z68114-8|CAA92162.1|  317|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z68337-9|CAA92751.2|  334|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>Z81513-7|CAB04179.1|  319|Caenorhabditis elegans Hypothetical
           protein F26D2.9 protein.
          Length = 319

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
 Frame = +1

Query: 379 WVKIKXFMKKLFRAQCV-LVHNKTYFIGFESNXFSILYITKALN*NSFLGILGTXIFTYD 555
           W+ I  F++KL    C+        F G   + F +  +T+    NS + I    I T D
Sbjct: 28  WISILIFVRKL--CSCLEYARFVIAFFGLFGSIFHLTVLTQKPIRNSSVTIFLIGIATCD 85

Query: 556 LIEYFYXLKKRGNVSHYXKKFLEGSLSTGTPI*YI 660
           L+  F  +   G + +    FL  S +   P+ YI
Sbjct: 86  LVRMFETIFSLGKMYYKQLLFLHISQTCVPPLSYI 120


>Z68114-8|CAA92162.1|  317|Caenorhabditis elegans Hypothetical
           protein F17A2.11 protein.
          Length = 317

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +2

Query: 149 CIYQIATHVSLLENIIILIK*YL--EASNVISFHYVNMSNYLIFLLA-VIILVEKE 307
           C+Y ++   S++ NI++L+  YL  EA+  ++    N    +I LL  V +LV  E
Sbjct: 89  CLYFVSQSTSVVSNILVLLTIYLKYEAAKNVTNKQSNKCIVIILLLVPVFVLVGAE 144


>Z68337-9|CAA92751.2|  334|Caenorhabditis elegans Hypothetical
           protein M7.13 protein.
          Length = 334

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 497 LVIYSIENXLLSNPIKYVLLCT 432
           LVI ++E  L + PI +VLLC+
Sbjct: 79  LVIVNLEESLFNKPIAFVLLCS 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,600,729
Number of Sequences: 27780
Number of extensions: 195778
Number of successful extensions: 348
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)