Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0907
(673 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0484 + 8805053-8805538 44 8e-05
03_02_0483 - 8804021-8804485 44 8e-05
03_02_0485 - 8808139-8808618 44 1e-04
03_02_0478 + 8775892-8776377 44 1e-04
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 42 6e-04
01_01_0229 - 1943473-1943922 41 8e-04
01_01_0231 + 1951047-1951499 41 0.001
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 37 0.013
01_01_0227 + 1933247-1933699 36 0.029
06_01_1017 - 7951985-7952425 33 0.16
11_02_0041 - 7669692-7670312 31 0.63
02_02_0077 - 6586638-6587165 31 1.1
03_05_0543 - 25404630-25405408,25405461-25405605 30 1.5
12_02_1174 - 26696869-26698191 30 1.9
02_01_0760 - 5639315-5639685,5640072-5640360 30 1.9
02_03_0235 - 16702768-16702956,16703956-16704492,16705084-167052... 29 2.6
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 29 4.5
08_02_1147 - 24688686-24689729,24689875-24690036,24690339-246903... 28 5.9
06_03_0196 - 17784747-17784833,17786061-17786333,17787982-177881... 28 5.9
06_01_0407 + 2901321-2901739,2902673-2902825,2902899-2902981,290... 28 5.9
>03_02_0484 + 8805053-8805538
Length = 161
Score = 44.4 bits (100), Expect = 8e-05
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Frame = +1
Query: 283 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 438
DV EE+ V+ DG V+ + G+ EE+ D+ + R +F RR+ LPEN P+
Sbjct: 70 DVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 129
Query: 439 TVESRLSSDGVLTVIAPR 492
+++ + +GVLTV P+
Sbjct: 130 QIKASM-ENGVLTVTVPK 146
>03_02_0483 - 8804021-8804485
Length = 154
Score = 44.4 bits (100), Expect = 8e-05
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Frame = +1
Query: 283 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 438
DV EE+ V+ DG V+ + G+ EE+ D+ + R +F RR+ LPEN P+
Sbjct: 63 DVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 122
Query: 439 TVESRLSSDGVLTVIAPR 492
+++ + +GVLTV P+
Sbjct: 123 QIKASM-ENGVLTVTVPK 139
>03_02_0485 - 8808139-8808618
Length = 159
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Frame = +1
Query: 283 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 438
DV EE+ V+ DG ++ + G+ EE+ D+ + R +F RR+ LPEN P+
Sbjct: 68 DVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPE 127
Query: 439 TVESRLSSDGVLTVIAPR 492
+++ + +GVLTV P+
Sbjct: 128 QIKASM-ENGVLTVTVPK 144
>03_02_0478 + 8775892-8776377
Length = 161
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Frame = +1
Query: 283 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 438
DV EE+ V+ DG ++ + G+ EE+ D+ + R +F RR+ LP+N P+
Sbjct: 70 DVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPE 129
Query: 439 TVESRLSSDGVLTVIAPRTPA 501
+++ + +GVLTV P+ A
Sbjct: 130 QIKASM-ENGVLTVTVPKEEA 149
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 41.5 bits (93), Expect = 6e-04
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +1
Query: 283 DVQHFSPEEISVKTADGYVIV-----EGKHEERQDEHGYISR---QFTRRYALPENCNPD 438
D+ EE+ V+ +G V+V + E++ D+ + R QF RR+ LPEN D
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 439 TVESRLSSDGVLTVIAPR 492
V++ L +GVLTV P+
Sbjct: 119 QVKAGL-ENGVLTVTVPK 135
>01_01_0229 - 1943473-1943922
Length = 149
Score = 41.1 bits (92), Expect = 8e-04
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +1
Query: 283 DVQHFSPEEISVKTADGYVIV-----EGKHEERQDEHGYISR---QFTRRYALPENCNPD 438
D+ EE+ V+ +G V+V + E++ D+ + R QF RR+ LPEN D
Sbjct: 58 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 117
Query: 439 TVESRLSSDGVLTVIAPR 492
V++ + +GVLTV P+
Sbjct: 118 QVKASM-ENGVLTVTVPK 134
>01_01_0231 + 1951047-1951499
Length = 150
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +1
Query: 283 DVQHFSPEEISVKTADGYVIV-----EGKHEERQDEHGYISR---QFTRRYALPENCNPD 438
D+ EE+ V+ +G V+V + E++ D+ + R QF RR+ LPEN D
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 439 TVESRLSSDGVLTVIAPR 492
V++ + +GVLTV P+
Sbjct: 119 QVKAGM-ENGVLTVTVPK 135
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 37.1 bits (82), Expect = 0.013
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Frame = +1
Query: 271 QVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDE------HGYISRQ----FTRRYALP 420
++ D+ S EE+ V D +++ G+H++ + E G+ + + R ALP
Sbjct: 145 RMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDMRLALP 204
Query: 421 ENCNPDTVESRLSSDGVLTVIAPRT 495
+ C+ V + L +GVL V P+T
Sbjct: 205 DECDKSKVRAEL-KNGVLLVTVPKT 228
>01_01_0227 + 1933247-1933699
Length = 150
Score = 35.9 bits (79), Expect = 0.029
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +1
Query: 343 VEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLTVIAPR 492
V+GK++ER S +F RR+ LP D V + + +GVLTV P+
Sbjct: 87 VDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPK 135
>06_01_1017 - 7951985-7952425
Length = 146
Score = 33.5 bits (73), Expect = 0.16
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = +1
Query: 310 ISVKTADGYVIVEGKHEERQDEHGYISR----QFTRRYALPENCNPDTVESRLSSDGVLT 477
++V+ A + E + E +D +++ +F R ALP + + + + + GVLT
Sbjct: 65 LTVRGAAPHAAAEKEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDN-GVLT 123
Query: 478 VIAPRTPAATR 510
V+ P+ PA R
Sbjct: 124 VVVPKEPAPAR 134
>11_02_0041 - 7669692-7670312
Length = 206
Score = 31.5 bits (68), Expect = 0.63
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 394 QFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTP 498
+F RR+ +P + V +RL DGVLTV P+ P
Sbjct: 141 RFWRRFRMPPGADVGRVAARLD-DGVLTVTVPKVP 174
>02_02_0077 - 6586638-6587165
Length = 175
Score = 30.7 bits (66), Expect = 1.1
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Frame = +1
Query: 280 LDVQHFSPEEISVKTADGYVIVEGKHEERQ----DEHG----YISRQ-----FTRRYALP 420
+D+ +P ++ V+ DG V+ R D+ G Y+ + F RR+ LP
Sbjct: 66 VDMPGVAPADVRVEVEDGNVLAISGERRRPAGDGDDGGEGVKYLRMERRMGKFMRRFPLP 125
Query: 421 ENCNPDTVESRLSSDGVLTVIAPRTP 498
E+ + D V + DGVLTV + P
Sbjct: 126 ESADLDGVRAEY-KDGVLTVTVDKKP 150
>03_05_0543 - 25404630-25405408,25405461-25405605
Length = 307
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +1
Query: 262 DKFQVNLDVQHFSPEEISVKTAD-GYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPD 438
+ ++LD F EEI V + G++ G ER SR F + + LP +CN D
Sbjct: 39 NSIHLSLDQLGFKREEIRVLVDNHGHLRTRG---ERPVAGNRWSR-FQKDFQLPADCNVD 94
Query: 439 TVESRLSSDGVLTVIAPRTPA 501
+ ++ ++ + + +TP+
Sbjct: 95 GIRAKFENEALTITLPKKTPS 115
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/82 (25%), Positives = 35/82 (42%)
Frame = +1
Query: 274 VNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESR 453
V + + F E++ V+ D + ++ E G +F + LP+NC+ D V +R
Sbjct: 26 VEIALPGFRKEQVRVQV-DNHGMLRATGERPPAARGGRWVRFKKDLRLPDNCDADAVRAR 84
Query: 454 LSSDGVLTVIAPRTPAATRTSE 519
D L + P AA E
Sbjct: 85 F-DDHKLIITLPLVAAAVDVDE 105
>02_01_0760 - 5639315-5639685,5640072-5640360
Length = 219
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/94 (22%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Frame = +1
Query: 256 NKDKFQVNLDVQHFSPEEISVKTADGYVIVEGK-----HEER-QDEHG--YISRQFTRRY 411
+++++++ +V +++ V DG + + G+ E+R +D G + + +
Sbjct: 120 DEERYRLRFEVPGLGKDDVRVYVDDGVLAIHGEKRDVVEEDRGRDGDGECWAAATYHAGL 179
Query: 412 ALPENCNPDTVESRLSSDGVLTVIAPRTPAATRT 513
LPE+ + + + + DGVL V PR+P R+
Sbjct: 180 LLPEDAVAEGITAEVR-DGVLHVTVPRSPERKRS 212
>02_03_0235 -
16702768-16702956,16703956-16704492,16705084-16705233,
16705310-16705625,16707005-16707286,16707895-16707971,
16708121-16708186,16708700-16709246,16709435-16709565,
16709642-16709746,16709859-16710039,16710123-16710185,
16711000-16711109,16711576-16711638,16711859-16712191
Length = 1049
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/62 (32%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Frame = +3
Query: 108 TAFAIRTSDWRLLRTIS*RPSSRQRCPEITTGRGSRWRWPI--ETSVPPSPE*GQIPGQL 281
TA A R W + +R R P RW WP S PP P PG
Sbjct: 3 TALASRVESWARDQAARLPAWARPRPPSAAAAAVPRWPWPWPWSWSWPPPPRAPAWPGDR 62
Query: 282 RR 287
RR
Sbjct: 63 RR 64
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Frame = +1
Query: 49 RILK*SKNVSAAIHPGIPTEPPSRSGL-------RTGAYSGRSPDGRHHANDVQRL 195
R++K + I P + PPSRS R+ + G S +HH +D Q L
Sbjct: 811 RVVKDQSSSELRIKPKVADRPPSRSSRSHSIGTDRSSTHEGSSHSKKHHEHDSQSL 866
>08_02_1147 -
24688686-24689729,24689875-24690036,24690339-24690368,
24690713-24690860,24691302-24691489
Length = 523
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/71 (28%), Positives = 25/71 (35%)
Frame = +1
Query: 154 SPDGRHHANDVQRLLPAVEADGDGQ*RRRFHHHLNKDKFQVNLDVQHFSPEEISVKTADG 333
S D RH + R E +GQ R+ N F VQH S EE +
Sbjct: 383 SSDSRHRRPEYGRGNSTSELGSEGQRRQESQQGRNGPTFNRRRGVQHMSEEEREARLRQM 442
Query: 334 YVIVEGKHEER 366
E E+R
Sbjct: 443 QADAEVHEEQR 453
>06_03_0196 -
17784747-17784833,17786061-17786333,17787982-17788166,
17788267-17788381
Length = 219
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -1
Query: 664 CKIKLTTRIHFFDSQAF-RRVIXLFRLLSTSAVGSL 560
C + + R+HFF+ +A + + LF LL+ +++G L
Sbjct: 52 CTLHVAQRLHFFEPKAIDGQTVILFGLLNGTSIGLL 87
>06_01_0407 +
2901321-2901739,2902673-2902825,2902899-2902981,
2903081-2903180,2904580-2904693,2905292-2905434,
2905825-2905919
Length = 368
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/62 (33%), Positives = 25/62 (40%)
Frame = -1
Query: 631 FDSQAFRRVIXLFRLLSTSAVGSLISFXTGPV*VMGTARSFSWQPESWERSRSARRQRTA 452
F S R L R+LST A S G + A SFSW P S R+R R
Sbjct: 8 FSSATTSRRATLRRILSTPAF-SAACLLFGLAGFLAAALSFSWSPGSAPRARCPDSSRPL 66
Query: 451 EI 446
+
Sbjct: 67 SV 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,080,988
Number of Sequences: 37544
Number of extensions: 343349
Number of successful extensions: 1227
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -