Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0907
(673 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 69 3e-12
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 66 3e-11
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 60 2e-09
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 59 4e-09
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 59 4e-09
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 57 1e-08
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 1e-08
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 56 3e-08
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 42 3e-04
SB_18447| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5) 33 0.28
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05) 30 2.0
SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_58458| Best HMM Match : Guanylate_cyc (HMM E-Value=1.2e-36) 28 6.0
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 68.9 bits (161), Expect = 3e-12
Identities = 35/87 (40%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Frame = +1
Query: 262 DKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPD 438
DK ++ LDV+++ PEEIS+K G + ++GKH+ + EHGY + +F R Y LP+ +
Sbjct: 38 DKVEIATLDVKNYRPEEISLKVEHGRIKIDGKHKS-EGEHGYETSEFHRSYNLPDGVDVS 96
Query: 439 TVESRLSSDGVLTVIAPRT-PAATRTS 516
TV SR++ DG+L + A + P T S
Sbjct: 97 TVSSRITGDGLLHIEALKAEPQETEVS 123
Score = 27.5 bits (58), Expect(2) = 1.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 403 RRYALPENCNPDTVESRLSSDGVLTVIAPR 492
R + LP++ + D++ SRL DG L + A R
Sbjct: 161 RHFVLPKDVDMDSLVSRLGKDGKLYIEAKR 190
Score = 21.8 bits (44), Expect(2) = 1.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 253 LNKDKFQVNLDVQHFSPE 306
++ +F V LDV FSP+
Sbjct: 138 IDDKRFTVTLDVSSFSPD 155
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 65.7 bits (153), Expect = 3e-11
Identities = 34/87 (39%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Frame = +1
Query: 253 LNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENC 429
++ DKFQ+ LDV+ F PEEI+ K +G + V G + + E G+ S++F R Y LPE
Sbjct: 1 MDADKFQIATLDVREFKPEEITCKVENGKIKVSGL-QRHESEEGFDSKEFRRCYNLPEGV 59
Query: 430 NPDTVESRLSSDGVLTVIA-PRTPAAT 507
+ ++ +R++ DG+L V A ++P AT
Sbjct: 60 DESSISTRIAEDGMLHVEALKKSPPAT 86
Score = 59.7 bits (138), Expect = 2e-09
Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Frame = +1
Query: 265 KFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYIS-RQFTRRYALPENCNPDT 441
KF + LDV F PEE+ VK + V + E +EHG+ + RQF R + LP + DT
Sbjct: 99 KFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQFNRHFVLPREVDMDT 156
Query: 442 VESRLSSDGVLTVIAPRTP 498
+ RL DGVL + A + P
Sbjct: 157 LVPRLGKDGVLYIEADKRP 175
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/69 (42%), Positives = 44/69 (63%)
Frame = +1
Query: 280 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 459
LDV+ + PEEIS K +G V V+G+H + E G+ ++F R + LPE +P+ V SR+S
Sbjct: 12 LDVKEYRPEEISFKVENGVVKVQGRH-VNEGEFGFELKEFRRTFTLPEGIDPENVTSRIS 70
Query: 460 SDGVLTVIA 486
+ G L + A
Sbjct: 71 NHGHLHIEA 79
Score = 52.4 bits (120), Expect = 3e-07
Identities = 26/81 (32%), Positives = 43/81 (53%)
Frame = +1
Query: 259 KDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPD 438
+DKF + +DV F PE I V+ ++V HE + H Y + F R++ LP + D
Sbjct: 95 EDKFSMAIDVAGFPPESIKVQVLGNELLVNANHEVEHEGH-YHAMHFNRQFVLPREVDMD 153
Query: 439 TVESRLSSDGVLTVIAPRTPA 501
++ +RL +G L A ++ A
Sbjct: 154 SLTTRLDKEGKLHFEAKKSVA 174
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 58.8 bits (136), Expect = 4e-09
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Frame = +1
Query: 256 NKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCN 432
N++K ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R +ALPE
Sbjct: 3 NENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGVE 61
Query: 433 PDTVESRLSSDGVLTVIA 486
V++R+S+ G L + A
Sbjct: 62 ASNVKTRISNHGQLHIEA 79
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Frame = +1
Query: 262 DKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDT 441
DKF + +DV F P+ I V+ ++V HE + H Y + F R++ LP + D+
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDS 155
Query: 442 VESRLSSDGVLTVIAPR--TPAATRTSEL 522
+ +RL +G L A + PA EL
Sbjct: 156 LTTRLDKEGKLHFEAKKRNAPALPPVREL 184
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 58.8 bits (136), Expect = 4e-09
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Frame = +1
Query: 256 NKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCN 432
N++K ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R +ALPE
Sbjct: 3 NENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGVE 61
Query: 433 PDTVESRLSSDGVLTVIA 486
V++R+S+ G L + A
Sbjct: 62 ASNVKTRISNHGQLHIEA 79
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Frame = +1
Query: 262 DKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDT 441
DKF + +DV F P+ I V+ ++V HE + H Y + F R++ LP + D+
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDS 155
Query: 442 VESRLSSDGVLTVIAPR--TPAATRTSEL 522
+ +RL +G L A + PA EL
Sbjct: 156 LTTRLDKEGKLHFEAKKRNAPALPPVREL 184
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 57.2 bits (132), Expect = 1e-08
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Frame = +1
Query: 256 NKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCN 432
N++K ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R + LPE
Sbjct: 3 NENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVE 61
Query: 433 PDTVESRLSSDGVLTVIA 486
V++R+S+ G L + A
Sbjct: 62 ASNVKTRISNHGQLHIEA 79
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = +1
Query: 250 HLNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPEN 426
+L D+ ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R + LPE
Sbjct: 235 YLQLDELEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEG 293
Query: 427 CNPDTVESRLSSDGVLTVIA 486
V++R+S+ G L + A
Sbjct: 294 VEASNVKTRISNHGQLHIEA 313
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Frame = +1
Query: 262 DKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDT 441
DKF + +DV F P+ I V+ ++V HE + H Y + F R++ LP + D+
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDS 155
Query: 442 VESRLSSDGVLTVIAPR--TPAATRTSEL 522
+ +RL +G L A + PA EL
Sbjct: 156 LTTRLDKEGKLHFEAKKRNAPALPPVREL 184
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Frame = +1
Query: 262 DKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDT 441
DKF + +DV F P+ I V+ ++V HE + H Y + F R++ LP + D+
Sbjct: 331 DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDS 389
Query: 442 VESRLSSDGVLTVIAPR--TPAATRTSEL 522
+ +RL +G L A + PA EL
Sbjct: 390 LTTRLDKEGKLHFEAKKRNAPALPPVREL 418
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 57.2 bits (132), Expect = 1e-08
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Frame = +1
Query: 256 NKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCN 432
N++K ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R + LPE
Sbjct: 3 NENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVE 61
Query: 433 PDTVESRLSSDGVLTVIA 486
V++R+S+ G L + A
Sbjct: 62 ASNVKTRISNHGQLHIEA 79
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Frame = +1
Query: 262 DKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDT 441
DKF + +DV F P+ I V+ ++V HE + H Y + F R++ LP + D+
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDS 155
Query: 442 VESRLSSDGVLTVIAPR--TPAATRTSEL 522
+ +RL +G L A + PA EL
Sbjct: 156 LTTRLDKEGKLHFEAKKRNAPALPPVREL 184
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 55.6 bits (128), Expect = 3e-08
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Frame = +1
Query: 256 NKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCN 432
N++K ++ LDV+ + PEEIS K +G V V+G+H + G+ ++F R + LPE
Sbjct: 4 NENKLEIAKLDVREYRPEEISFKVENGVVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVE 62
Query: 433 PDTVESRLSSDGVLTVIA 486
V++R+S+ G L + A
Sbjct: 63 ASNVKTRISNHGQLHIEA 80
Score = 51.6 bits (118), Expect = 6e-07
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Frame = +1
Query: 262 DKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDT 441
DKF + +DV+ F PE I V+ ++V HE + H Y + F R++ LP + D+
Sbjct: 97 DKFSMAMDVKGFPPEAIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFILPREVDMDS 155
Query: 442 VESRLSSDGVLTVIAPR--TPAATRTSEL 522
+ +RL +G L A + PA EL
Sbjct: 156 LTTRLDKEGKLHFEAKKRNAPALPPVREL 184
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +1
Query: 265 KFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYI-SRQFTRRYALPE 423
KF + LDV F PEE+ VK + V + E +EHG+ +RQF R + LP+
Sbjct: 27 KFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQFNRHFVLPQ 78
>SB_18447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 33.5 bits (73), Expect = 0.16
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +1
Query: 250 HLNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEH 378
HL+ D+F + D H +E+ ++T + Y+ + H +R + H
Sbjct: 46 HLDTDEFHIETDELHIDIDELHIETYELYIDTDELHTDRNEIH 88
>SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)
Length = 436
Score = 32.7 bits (71), Expect = 0.28
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 352 KHEERQDEHGYISRQFTRRYAL 417
KHEER+D HGY+ + T ++AL
Sbjct: 72 KHEEREDRHGYLKDKVTLQHAL 93
>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
Length = 3397
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 346 EGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLT 477
E K+EE DEHG I R+ T+ TV ++ DGV T
Sbjct: 1187 ETKYEEYVDEHGQIIRRTTKVKHTAVKQERTTVTKTVTRDGVTT 1230
>SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +1
Query: 316 VKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPE 423
+++A GYV+ G H + + G + + R LP+
Sbjct: 10 IRSARGYVVTSGSHTSKSEVRGIMEETCSNRNPLPQ 45
>SB_58458| Best HMM Match : Guanylate_cyc (HMM E-Value=1.2e-36)
Length = 1065
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = -1
Query: 193 ISGHRWRDDGRQEIVRSKRQSEVLIAKAVRLVSQDEW---QQRHFYFTLGCEISSDITVR 23
+ +WR D R I+RS++ + V LVS D + QR + T+G S+ + ++
Sbjct: 383 LEDEQWRVDFRDVIIRSRQMGS--LRSQVSLVSTDSFDNINQRQIFTTVGIYKSNMVAIK 440
>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 94 GIPTEPPSRSGLRTGAYSGRS-PDGRH 171
G P+ PPSRS RT SG S D RH
Sbjct: 853 GKPSTPPSRSKKRTRGISGDSVSDNRH 879
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,243,388
Number of Sequences: 59808
Number of extensions: 376449
Number of successful extensions: 1089
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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