Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0907
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.1  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 9/91 (9%)
 Frame = +1

Query: 67  KNVSAAIHPGIPTEPPSRSGLRTGAYSGRSPDGRHHAN---------DVQRLLPAVEADG 219
           + V A++ P  P  P   S     AY+    D   H           D + LLP V   G
Sbjct: 172 QTVVASMDPPEPPVPTVTSACVGSAYTPLKEDHDDHYGVPTLEELGFDTEGLLPPVWVGG 231

Query: 220 DGQ*RRRFHHHLNKDKFQVNLDVQHFSPEEI 312
           + +   R   HL +  +  +      +P+ +
Sbjct: 232 ESEALARLERHLERKAWVASFGRPKMTPQSL 262


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +3

Query: 192 ITTGRGSRWRWPIETSVPPSPE*GQIP 272
           I TG       P+  S+PP P    +P
Sbjct: 748 IQTGANVNLWQPLSVSIPPPPSAQNVP 774


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -1

Query: 673 TEECKIKLTTRIHFFDSQAFR 611
           T+ECK+++ +  H  D   F+
Sbjct: 174 TQECKLQMESLSHTTDEMIFQ 194


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,225
Number of Sequences: 438
Number of extensions: 3048
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)