Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0901
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces po...    28   1.1  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    27   1.9  
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    26   5.7  
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    26   5.7  
SPBC16E9.05 |erg6||delta-sterol C-methyltransferase |Schizosacch...    25   7.6  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   7.6  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    25   10.0 
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   10.0 

>SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = -1

Query: 344 IVLAMASVNRLTLGGASPG*ARARPPILVKWKGLRANKSPFFIKKTRWGVNTFT 183
           +V  +  VN L     S    RA P  L K K    NK+ + I    WG NTF+
Sbjct: 177 VVDGLNEVNVLNQLKLSAEETRAHPFYLAKGKS-GENKNEWIINTPNWGTNTFS 229


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = -2

Query: 553 TNYGRLAKG-GSHLLQEIINYWCSVL*VRTIILFLPQSSPALRLQGLGAAAIL*YTVQVR 377
           TN  R A G  ++ L   I   C     R++   +P    A  L G+G  AI  YT    
Sbjct: 642 TNLKRTAGGFWTYFLFLFIGATCMSAFFRSLAGIMPNVESASALGGIGVLAIAIYTGYAI 701

Query: 376 PNI 368
           PNI
Sbjct: 702 PNI 704


>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 312 HTRWSLSWLSPCSPTYLGQMER 247
           H +W+L  L+PC PTY    +R
Sbjct: 121 HQKWALR-LNPCLPTYFFHRQR 141


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 234 VGPEAFPFDQDRWASTGLARR 296
           V PE   F+ DRWA  GLA +
Sbjct: 424 VYPEPETFNPDRWAPNGLAEQ 444


>SPBC16E9.05 |erg6||delta-sterol C-methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -3

Query: 480 YKSVPSSYFCHKAVLH*GFKGWEQLLYSDILYK*DLISQEKRLESHCISY 331
           YKSV +SY+     L+    GW Q  +    YK +  +Q      H ++Y
Sbjct: 71  YKSVVNSYYDLATDLY--EYGWSQSFHFSRFYKGEAFAQSIARHEHYLAY 118


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 603  ISLLWDISKRT*SIGTVQITVGLLKEGATYYR 508
            I L+W  SK +   G  ++ +GLL E  T+YR
Sbjct: 3799 IDLIWLASKVS-EAGIGKLDIGLLMEKPTFYR 3829


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +2

Query: 350 SSLFS*DIRSHLYSISEYSSCSQPLKPQ 433
           SS+F+   R+ +  ++++  CSQP+  +
Sbjct: 212 SSIFNQSFRTEISIMNDFGQCSQPISEE 239


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 142  NIFLGH*SFL--LYRLVKVFTPHLVFFMKKGLLLARRPF 252
            +I+LG  + L  L+  + V+ PHL++F    L +   PF
Sbjct: 1485 SIYLGSRTLLMLLFGTMTVWIPHLIYFWISTLAMCISPF 1523


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,696
Number of Sequences: 5004
Number of extensions: 57841
Number of successful extensions: 87
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)