Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0901
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0004 + 16234648-16234731,16235178-16235237,16235598-162356...    31   0.84 
02_05_0461 - 29242711-29242864,29242992-29243059,29243500-292435...    29   3.4  

>03_04_0004 +
           16234648-16234731,16235178-16235237,16235598-16235627,
           16235859-16235909,16235978-16236076,16236410-16236469,
           16236534-16236623,16237011-16237112,16237195-16237305,
           16237952-16238068,16238153-16238233,16239089-16239169,
           16239798-16239875,16239949-16240088,16240205-16240304,
           16240836-16240954,16241152-16241287,16241371-16241501,
           16242222-16242298,16242451-16242562,16242638-16242693,
           16243724-16243839,16245538-16245622,16245703-16245806,
           16246469-16246597,16246888-16246938
          Length = 799

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 537 LLKEGATYYRK*LITGAVYYKSVPSSYFCHKAVL 436
           L+K G +Y  K L+    Y+K+VP S FC   +L
Sbjct: 623 LVKHGFSYNGKDLLYSDRYFKTVPKSLFCLSGIL 656


>02_05_0461 -
           29242711-29242864,29242992-29243059,29243500-29243589,
           29244026-29244733
          Length = 339

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/62 (24%), Positives = 26/62 (41%)
 Frame = +3

Query: 147 LSWSLKFFIV*ISEGVYAPPCFFYEERTFVGPEAFPFDQDRWASTGLARRGST*CETVNG 326
           ++W   F ++     +Y P   F+ +      +  P  Q R  +  LAR G   C+ V  
Sbjct: 94  VTWQFNFGVLVSRYNLYIPDLLFFGKSATASADRSPELQARCVAAALARLGVARCDVVGF 153

Query: 327 SH 332
           S+
Sbjct: 154 SY 155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,305,490
Number of Sequences: 37544
Number of extensions: 364301
Number of successful extensions: 647
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)