Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0901
         (674 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001664-1|AAN71419.1|  779|Drosophila melanogaster RE48511p pro...    29   7.7  
AE013599-3812|AAM68305.1|  779|Drosophila melanogaster CG16786-P...    29   7.7  
AE013599-3811|AAF47161.1|  779|Drosophila melanogaster CG16786-P...    29   7.7  

>BT001664-1|AAN71419.1|  779|Drosophila melanogaster RE48511p
           protein.
          Length = 779

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -2

Query: 469 TIILFLPQSSPALRLQGLGAAAIL*YTVQVRPNISGKE 356
           T+++F PQSSPA  L+      I+   ++ +P ++ KE
Sbjct: 39  TVMVFSPQSSPAFELKSNDTHEII-NIIETKPKVTKKE 75


>AE013599-3812|AAM68305.1|  779|Drosophila melanogaster CG16786-PB,
           isoform B protein.
          Length = 779

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -2

Query: 469 TIILFLPQSSPALRLQGLGAAAIL*YTVQVRPNISGKE 356
           T+++F PQSSPA  L+      I+   ++ +P ++ KE
Sbjct: 39  TVMVFSPQSSPAFELKSNDTHEII-NIIETKPKVTKKE 75


>AE013599-3811|AAF47161.1|  779|Drosophila melanogaster CG16786-PA,
           isoform A protein.
          Length = 779

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -2

Query: 469 TIILFLPQSSPALRLQGLGAAAIL*YTVQVRPNISGKE 356
           T+++F PQSSPA  L+      I+   ++ +P ++ KE
Sbjct: 39  TVMVFSPQSSPAFELKSNDTHEII-NIIETKPKVTKKE 75


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,836,008
Number of Sequences: 53049
Number of extensions: 606381
Number of successful extensions: 802
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)