Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0901
         (674 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   2.0  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.1  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   8.1  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   8.1  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 338 IQCDSSLFS*DIRSHLYSISEYSS 409
           I CDSS F  D+ + L +  EY++
Sbjct: 65  INCDSSKFEEDLMNKLPTTPEYNN 88


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = -2

Query: 568 EYRDXTNYGRLAKGGSHLLQEIINYWCSVL*VRTIILFLPQSSP 437
           EY    NY        + L+  +NY+   + + T   FL Q+ P
Sbjct: 198 EYIIPANYSGWYLNHDYNLENKLNYFIEDIGLNTYYFFLRQAFP 241


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 193 TPSLIYTIKNFNDQERYFQFSQV 125
           T +L+  + N+ND+E   +F Q+
Sbjct: 61  TFNLVENLDNYNDKEAVNEFMQL 83


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 193 TPSLIYTIKNFNDQERYFQFSQV 125
           T +L+  + N+ND+E   +F Q+
Sbjct: 61  TFNLVENLDNYNDKEAVNEFMQL 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,420
Number of Sequences: 438
Number of extensions: 4206
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)