Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0901
         (674 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32530.1 68415.m03974 cellulose synthase family protein simil...    30   1.2  
At2g32610.1 68415.m03981 cellulose synthase family protein simil...    28   5.0  

>At2g32530.1 68415.m03974 cellulose synthase family protein similar
           to cellulose synthase catalytic subunit from Arabidopsis
           thaliana [gi:5230423], cellulose synthase-5 from Zea
           mays [gi:9622882]
          Length = 755

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -3

Query: 312 HTR-WSLSWLSPCSPTYLGQMERPPGQQKSFLHKK 211
           H+R W+ S++SP  P +LG M  PPG  ++ L ++
Sbjct: 469 HSRGWTSSYISPKPPAFLGAM--PPGGPEAMLQQR 501


>At2g32610.1 68415.m03981 cellulose synthase family protein similar
           to Zea mays cellulose synthase-3 [gi:9622878], -2
           [gi:9622876], -1 [gi:9622874]
          Length = 757

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -3

Query: 312 HTR-WSLSWLSPCSPTYLGQMERPPGQQKSFLHKK 211
           H+R W+ S++SP +P +LG M  P G  ++ L ++
Sbjct: 470 HSRGWTSSYISPDTPAFLGSM--PAGVPEALLQQR 502


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,083,425
Number of Sequences: 28952
Number of extensions: 294160
Number of successful extensions: 436
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)