Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0899
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0184 + 1359376-1359564,1359720-1359774,1360552-1360748,136...    33   0.19 
02_02_0728 + 13416481-13416889,13416979-13417065,13417220-134173...    28   5.4  

>12_01_0184 +
           1359376-1359564,1359720-1359774,1360552-1360748,
           1360998-1361119,1361205-1361352,1361501-1361570,
           1361675-1361820,1362021-1362113,1362675-1362819,
           1363523-1363704,1363748-1363819,1364174-1364277,
           1364417-1364473,1364560-1364746,1364836-1364979,
           1365092-1365214
          Length = 677

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 301 HINYLQANILQCSTYHNVTKLVVY 230
           H+NY  + +L CST H+VT + VY
Sbjct: 428 HVNYSSSGVLLCSTSHSVTNVKVY 451


>02_02_0728 +
           13416481-13416889,13416979-13417065,13417220-13417351,
           13417474-13417539,13417754-13418919
          Length = 619

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 125 VIEKPEV*LLNKVPCRIRVFCKLLF 199
           VI KP+  L N+ PCR R F    F
Sbjct: 38  VISKPDALLFNRTPCRRRFFIIFFF 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,038,653
Number of Sequences: 37544
Number of extensions: 191104
Number of successful extensions: 220
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)