Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0899
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35)         28   7.3  
SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16)                   28   7.3  

>SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35)
          Length = 1898

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = -2

Query: 558  KGQRXAXRRDXARQ*RLIIMLSAQTCKRYACIYFDTASIAPLSXAIVKHTKYLS*LDTSY 379
            KGQR   +    R  + +  + A TC  YAC   D A++      + +   Y   L   Y
Sbjct: 991  KGQRREAQSTLERPAQKLRPVEAITCAPYACFDADVATMGNCLKFLAECCWYYKLLSFEY 1050

Query: 378  IT 373
            IT
Sbjct: 1051 IT 1052


>SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16)
          Length = 3999

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 380 ISQILKMPLHVXNIFIIPLLRSYYLITHQLSASEH 276
           ++ +L  PL++ +I I P  R+ + I++ LSA  H
Sbjct: 229 VTCVLPSPLYIHHIRIFPYCRNGFRISYTLSADLH 263


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,360,893
Number of Sequences: 59808
Number of extensions: 270900
Number of successful extensions: 365
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)