Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0899
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98853-5|CAB57903.1|  290|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81575-10|CAB04640.1|  338|Caenorhabditis elegans Hypothetical p...    29   3.7  
AC024744-1|AAL00859.1|  685|Caenorhabditis elegans Hypothetical ...    28   6.4  

>Z98853-5|CAB57903.1|  290|Caenorhabditis elegans Hypothetical
           protein R08A2.5 protein.
          Length = 290

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -3

Query: 329 PLLRSYYLITHQLSASEHFTVQYLS*RYQTSSILLHINIYSGAQIIIYKTLESYKAPYLI 150
           P++R + +     S S  F   YLS   Q  SI+ H++  S  Q+ ++        P+L+
Sbjct: 141 PVMRCFQMTVLNDSTSSPFEFSYLSTDSQRKSIIGHVSRASSTQLTLH-LASIIDIPFLV 199

Query: 149 VK 144
           V+
Sbjct: 200 VQ 201


>Z81575-10|CAB04640.1|  338|Caenorhabditis elegans Hypothetical
           protein R08H2.13 protein.
          Length = 338

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 29  VLAFFFDCCRILMKTKLYILE 91
           VL  F+ CC +L K  LYI +
Sbjct: 52  VLGMFYSCCNVLAKPNLYITD 72


>AC024744-1|AAL00859.1|  685|Caenorhabditis elegans Hypothetical
           protein Y108G3AL.3 protein.
          Length = 685

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 225 TYKYLQWSTNNNLQNTRILQGTLFNS*TSGFSMT 124
           TYK+L  ST     +T +  GTL N+  S  +MT
Sbjct: 279 TYKFLDQSTGTMTSSTGVSVGTLTNTGVSSGTMT 312


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,762,187
Number of Sequences: 27780
Number of extensions: 212012
Number of successful extensions: 319
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)