BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--0899 (637 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z98853-5|CAB57903.1| 290|Caenorhabditis elegans Hypothetical pr... 29 2.8 Z81575-10|CAB04640.1| 338|Caenorhabditis elegans Hypothetical p... 29 3.7 AC024744-1|AAL00859.1| 685|Caenorhabditis elegans Hypothetical ... 28 6.4 >Z98853-5|CAB57903.1| 290|Caenorhabditis elegans Hypothetical protein R08A2.5 protein. Length = 290 Score = 29.1 bits (62), Expect = 2.8 Identities = 17/62 (27%), Positives = 30/62 (48%) Frame = -3 Query: 329 PLLRSYYLITHQLSASEHFTVQYLS*RYQTSSILLHINIYSGAQIIIYKTLESYKAPYLI 150 P++R + + S S F YLS Q SI+ H++ S Q+ ++ P+L+ Sbjct: 141 PVMRCFQMTVLNDSTSSPFEFSYLSTDSQRKSIIGHVSRASSTQLTLH-LASIIDIPFLV 199 Query: 149 VK 144 V+ Sbjct: 200 VQ 201 >Z81575-10|CAB04640.1| 338|Caenorhabditis elegans Hypothetical protein R08H2.13 protein. Length = 338 Score = 28.7 bits (61), Expect = 3.7 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +2 Query: 29 VLAFFFDCCRILMKTKLYILE 91 VL F+ CC +L K LYI + Sbjct: 52 VLGMFYSCCNVLAKPNLYITD 72 >AC024744-1|AAL00859.1| 685|Caenorhabditis elegans Hypothetical protein Y108G3AL.3 protein. Length = 685 Score = 27.9 bits (59), Expect = 6.4 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = -2 Query: 225 TYKYLQWSTNNNLQNTRILQGTLFNS*TSGFSMT 124 TYK+L ST +T + GTL N+ S +MT Sbjct: 279 TYKFLDQSTGTMTSSTGVSVGTLTNTGVSSGTMT 312 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,762,187 Number of Sequences: 27780 Number of extensions: 212012 Number of successful extensions: 319 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 316 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 319 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1406256614 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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