Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0896
         (675 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    23   2.3  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    23   3.0  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   4.0  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    22   4.0  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   5.3  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   7.0  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    21   9.2  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   9.2  

>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
 Frame = +2

Query: 335 ESCIYLSNNKNYCYL------VEL-YWMITLYK-CTLTSKKV 436
           ESC  +   K YCY       V L Y ++ +Y  C  T K V
Sbjct: 102 ESCAKIKKTKRYCYYYYAFFGVHLAYGVVIIYSICVQTEKSV 143


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/36 (22%), Positives = 18/36 (50%)
 Frame = -1

Query: 303 HTWIYIY*TFTSLQLLTVIFILEIILTVLKYCVTKE 196
           + WI +Y      Q++ + F   +++   K+CV  +
Sbjct: 165 YRWIVLYTLSKMSQVMLIQFCAFVVVLKQKFCVVNQ 200


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/27 (33%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
 Frame = -1

Query: 276 FTSLQLLTVIF---ILEIILTVLKYCV 205
           +++L  LT+IF   I+ +I+ ++ YC+
Sbjct: 233 WSALYFLTIIFLFFIIPLIILLILYCI 259


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 646 SPYTSFRPAASHSKVCQLH 590
           +P+ +F     HSK+C+L+
Sbjct: 421 TPFYNFNENTIHSKLCKLY 439


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 397 DHTIQMYPNIKEGTKLNLVVKKPESLYD 480
           D  I+  PN     + NLV  K ES+Y+
Sbjct: 179 DAVIKWSPNEDYSCEYNLVWIKEESIYE 206


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 162 RGSGTPRSQQRLMIQESVQRMN 97
           RGS TP S +    Q+++Q  N
Sbjct: 99  RGSSTPESPEHYYNQKTLQANN 120


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +1

Query: 22  YSLRLFSVIYFGLTSDIHRQHELKFIHPLN*FLNHKSLLRS 144
           YS+ + S   FG+ +   R    + +      ++ KS++RS
Sbjct: 173 YSVDIISTCAFGINTYCFRNDNSEILKMATQLVDFKSVIRS 213



 Score = 21.0 bits (42), Expect = 9.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 405 YTNVP*HQRRY*VKFGCEETGITL 476
           Y   P   R+  VK+  EETG TL
Sbjct: 360 YPLAPFLNRKSDVKYTFEETGFTL 383


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 500 KDKYVRQGCCKYCKTNF 550
           K K  RQ  CKYC   F
Sbjct: 73  KLKPKRQFICKYCNRQF 89


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,856
Number of Sequences: 336
Number of extensions: 3139
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)