Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0896
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro...    37   0.003
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    28   1.1  
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    27   1.9  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    25   10.0 
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    25   10.0 
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    25   10.0 
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    25   10.0 

>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
           protein modifier Ned8|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 78

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 22/67 (32%), Positives = 34/67 (50%)
 Frame = +1

Query: 256 KQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNIKEG 435
           K L G E  +DI P+  +S +K  V  K  IP  QQ+         DD   + Y +++ G
Sbjct: 6   KTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESY-HLEGG 64

Query: 436 TKLNLVV 456
           + L+LV+
Sbjct: 65  SVLHLVL 71


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = -1

Query: 645 RLIPLFVQQPVIAKSVNFIPGHFIKLLLNNPQKFVLQYLQHPCLT 511
           +L P+ + + V   S++      + +L N+P + V+QY  HPCL+
Sbjct: 593 QLGPVVMNKKVALASLSQSLFERLIILGNSPFRLVVQYRMHPCLS 637


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 600 VNFIPGHFIKLLLNNPQ 550
           V F PGHFI+ +L++PQ
Sbjct: 316 VPFAPGHFIEYILSHPQ 332


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 16/44 (36%), Positives = 27/44 (61%)
 Frame = -1

Query: 264 QLLTVIFILEIILTVLKYCVTKEPGVFNT*DGERRGSGTPRSQQ 133
           +L T++F    + +VL+ CVT +PG F++ D ER G  +   +Q
Sbjct: 718 KLYTIVFRCNELQSVLRECVT-QPG-FDS-DNERDGHASIPDRQ 758


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/48 (27%), Positives = 18/48 (37%)
 Frame = +2

Query: 482 HPLSITKDKYVRQGCCKYCKTNF*GLFKRSLIKCPGMKLTDFAMTGCW 625
           H  + T D Y     C  C +    L + S I  PG  L    + G +
Sbjct: 131 HASAYTVDDYKAAANCLQCASGIAKLLRESFIHAPGRDLDSNFLLGIY 178


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -1

Query: 606 KSVNFIPGHFIKLLLNNPQKFVLQYLQH--PCLTY-LSFVMLK 487
           K V++  GH IK+     Q+F L+ L     CL Y L F + K
Sbjct: 257 KEVDWAIGHLIKISFERHQEFKLERLPSLAECLVYSLGFQVTK 299


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = -3

Query: 646 SPYTSFRPAASHSKVCQLHPRTFYQTSLEQSSEVCFAVFAASLSDILVF 500
           S + S      H+   Q H R+F  T+   S EV     A + SDI  F
Sbjct: 250 SSHGSHEEDTHHADKPQAHSRSFVGTARYVSPEVLSDKIAGTASDIWAF 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,566,140
Number of Sequences: 5004
Number of extensions: 49428
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)