Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0896
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0148 + 15106392-15106484,15107517-15107776,15107920-15108028     40   0.002
06_03_0944 + 26202053-26202229,26203788-26204047,26204145-262042...    40   0.002
01_06_0031 + 25760878-25761342                                         31   1.1  
03_06_0747 - 35967119-35967185,35967325-35967422,35967533-359675...    28   5.9  
02_04_0513 - 23569212-23569675,23569759-23569801,23569888-235700...    28   7.8  

>09_04_0148 + 15106392-15106484,15107517-15107776,15107920-15108028
          Length = 153

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 26/67 (38%), Positives = 34/67 (50%)
 Frame = +1

Query: 256 KQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNIKEG 435
           K L G E  IDI P+  I  +K  V  K  IP  QQ+         DD T + Y NI+ G
Sbjct: 82  KTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDY-NIEGG 140

Query: 436 TKLNLVV 456
           + L+LV+
Sbjct: 141 SVLHLVL 147


>06_03_0944 +
           26202053-26202229,26203788-26204047,26204145-26204245,
           26204512-26204584,26205482-26205581
          Length = 236

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 26/67 (38%), Positives = 34/67 (50%)
 Frame = +1

Query: 256 KQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNIKEG 435
           K L G E  IDI P+  I  +K  V  K  IP  QQ+         DD T + Y NI+ G
Sbjct: 110 KTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDY-NIEGG 168

Query: 436 TKLNLVV 456
           + L+LV+
Sbjct: 169 SVLHLVL 175


>01_06_0031 + 25760878-25761342
          Length = 154

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = +1

Query: 256 KQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNIKEG 435
           + L G E  IDI  +  +  +K  V  +  IP  QQ+         DD T   Y  I+ G
Sbjct: 82  RTLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDY-KIEAG 140

Query: 436 TKLNLVV 456
           + L+LV+
Sbjct: 141 SVLHLVL 147


>03_06_0747 -
           35967119-35967185,35967325-35967422,35967533-35967574,
           35967734-35967782,35967971-35968047,35968306-35968362,
           35968511-35968611,35968698-35969106
          Length = 299

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 322 FSTLI*AYLDIYLLNIHLPATAYGYFHFGNNFDGFKV 212
           +S L   YL ++LLN+     A G F F +   GF++
Sbjct: 191 YSDLTVDYLKMFLLNVPATTLALGLFFFIDELTGFEI 227


>02_04_0513 -
           23569212-23569675,23569759-23569801,23569888-23570000,
           23570099-23570158,23570472-23570541,23570887-23570951,
           23571548-23571685,23571764-23573015
          Length = 734

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 244 ENNRKQLQGGECLIDIY--PSMLISELKRHVARKLHIPVEQQK 366
           +NN  QL  GE  IDI+     L+ ELK+HV + L    + Q+
Sbjct: 350 DNNTDQLGDGEIEIDIHAVSDDLLFELKKHVDKYLQEREQSQQ 392


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,447,619
Number of Sequences: 37544
Number of extensions: 276055
Number of successful extensions: 610
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)