Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0896
         (675 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_269| Best HMM Match : ubiquitin (HMM E-Value=1.2e-09)               34   0.12 
SB_16904| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_50918| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)              28   6.0  
SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_30264| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_41563| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_6561| Best HMM Match : HEAT (HMM E-Value=0.028)                     28   7.9  

>SB_269| Best HMM Match : ubiquitin (HMM E-Value=1.2e-09)
          Length = 414

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 24/81 (29%), Positives = 43/81 (53%)
 Frame = +1

Query: 307 ISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNIKEGTKLNLVVKKPESLYDAS 486
           I  +K  VA++L + VE+Q+         DD ++  Y  I +G+KL L +KK  S   +S
Sbjct: 126 ILAVKTLVAQELDVQVERQRLVYKGKTLADDCSLDEYL-IGDGSKLYLSIKKLSSQPGSS 184

Query: 487 FKHYKRQVCQTRMLQILQNKL 549
            K+Y       ++ ++L++ L
Sbjct: 185 QKNYAGSNFWNQLHKLLKSHL 205


>SB_16904| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 985

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 6/40 (15%)
 Frame = -3

Query: 295 DIYLLNIHLPATAYGYFH-----FGNNFDGF-KVLRNKRT 194
           D+YLL++H+  + Y YFH     F NNF G+ + +RN ++
Sbjct: 158 DVYLLHLHV--SVYNYFHRLYAMFPNNFVGYLRHMRNDKS 195


>SB_50918| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1112

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +1

Query: 463 PESLYDASFKHYKRQVCQTRMLQILQNKLLRIVQEKFDKMSWDEVDRLCYDWLLDEKRYK 642
           PES  D + +HY+   CQ R   +L N  L +       ++ DE   +   +L+D K YK
Sbjct: 165 PESSVDGN-RHYRATHCQLRNQLLLDNSNLILTPVLGTYLTTDETRYVELLFLVDNKLYK 223


>SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)
          Length = 558

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +1

Query: 460 KPESL--YDASFKHYKRQVCQTRMLQILQNKLLRIVQEKFDKMSWDE 594
           KP SL  Y AS  HY   +C T   ++   K +R + EK+    + E
Sbjct: 409 KPHSLPSYRASSGHYYPALCFTSFYELPTRKSVRAMNEKYRSTDYAE 455


>SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 662

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/39 (30%), Positives = 26/39 (66%)
 Frame = -2

Query: 197 NLVFLTPKTARDEAQVHHDLNNDL*FKNQFKG*MNLSSC 81
           +L++LT +T+ D  Q+ +DLN    + N+++  +N++ C
Sbjct: 402 SLLYLTIETSDDVIQLQNDLNKLYEWSNKWQMELNINKC 440


>SB_30264| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 689

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/39 (30%), Positives = 26/39 (66%)
 Frame = -2

Query: 197 NLVFLTPKTARDEAQVHHDLNNDL*FKNQFKG*MNLSSC 81
           +L++LT +T+ D  Q+ +DLN    + N+++  +N++ C
Sbjct: 470 SLLYLTIETSDDVIQLQNDLNKLYEWSNKWQMELNINKC 508


>SB_41563| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = -2

Query: 197 NLVFLTPKTARDEAQVHHDLNNDL*FKNQFKG*MNLSSC 81
           +L++LT +T+ D  Q+ +DLN    + N+++  +N+  C
Sbjct: 16  SLLYLTIETSDDVIQLQNDLNKLYEWSNKWQMELNIDKC 54


>SB_6561| Best HMM Match : HEAT (HMM E-Value=0.028)
          Length = 1444

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +1

Query: 406 IQMYPNIKEGTKLNLVVKKPESLYDASFKHYKRQVCQTRMLQILQNKLLRIVQEKFDKM 582
           + +  NI   T+L     +P  L    F   KR      ML++  ++LLR+  E  DK+
Sbjct: 577 VNVKQNIIRMTELIAKALEPSRLQQPDFVLTKRSELINHMLEMEPSELLRLALESVDKL 635


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,695,683
Number of Sequences: 59808
Number of extensions: 360598
Number of successful extensions: 753
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)