Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0896
         (675 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-2445|AAF55498.1|  130|Drosophila melanogaster CG7215-PA...    74   2e-13
BT024445-1|ABC86507.1|   84|Drosophila melanogaster IP01714p pro...    37   0.022
AE014134-2997|AAF53724.1|   84|Drosophila melanogaster CG10679-P...    37   0.022
AE014297-3146|AAF55988.1|  706|Drosophila melanogaster CG13855-P...    29   4.4  
AF492763-1|AAM11672.1|  415|Drosophila melanogaster polyprotein ...    29   5.8  

>AE014297-2445|AAF55498.1|  130|Drosophila melanogaster CG7215-PA,
           isoform A protein.
          Length = 130

 Score = 74.1 bits (174), Expect = 2e-13
 Identities = 39/117 (33%), Positives = 66/117 (56%)
 Frame = +1

Query: 256 KQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNIKEG 435
           K L+G +C I++ P+  I E+K  +  +L I    QK         ++ TI  YPNIKEG
Sbjct: 6   KVLKGKDCTIEVAPTSTILEVKHQIEAELQISATNQKLLLLGRPLNNEQTIASYPNIKEG 65

Query: 436 TKLNLVVKKPESLYDASFKHYKRQVCQTRMLQILQNKLLRIVQEKFDKMSWDEVDRL 606
           TKLNLVV KP  L D+  + +++   +  + + + N+ +   + K ++ S D+++RL
Sbjct: 66  TKLNLVVIKP-CLRDSILRGFRKHYSEP-LAERMTNEFMADFERKINEQSLDDLERL 120


>BT024445-1|ABC86507.1|   84|Drosophila melanogaster IP01714p
           protein.
          Length = 84

 Score = 37.1 bits (82), Expect = 0.022
 Identities = 23/67 (34%), Positives = 33/67 (49%)
 Frame = +1

Query: 256 KQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNIKEG 435
           K L G E  IDI P+  +  +K  V  K  IP +QQ+         DD T   Y  ++ G
Sbjct: 6   KTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADY-KVQGG 64

Query: 436 TKLNLVV 456
           + L+LV+
Sbjct: 65  SVLHLVL 71


>AE014134-2997|AAF53724.1|   84|Drosophila melanogaster CG10679-PA
           protein.
          Length = 84

 Score = 37.1 bits (82), Expect = 0.022
 Identities = 23/67 (34%), Positives = 33/67 (49%)
 Frame = +1

Query: 256 KQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNIKEG 435
           K L G E  IDI P+  +  +K  V  K  IP +QQ+         DD T   Y  ++ G
Sbjct: 6   KTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADY-KVQGG 64

Query: 436 TKLNLVV 456
           + L+LV+
Sbjct: 65  SVLHLVL 71


>AE014297-3146|AAF55988.1|  706|Drosophila melanogaster CG13855-PA
           protein.
          Length = 706

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 238 QNENNRKQLQGGECLIDIYPS-MLISELKRHVARKLHIPVE 357
           +N   + +L   E L  +YP+ ML+ E+K+ +ARK  +  E
Sbjct: 54  ENVTVKFRLSDSEILAQVYPNCMLLGEIKQDLARKFEVAPE 94


>AF492763-1|AAM11672.1|  415|Drosophila melanogaster polyprotein
           protein.
          Length = 415

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +1

Query: 436 TKLNLVVKKPESLYDASFKHYKRQVCQTRMLQILQNKLLRIVQEKFDKMSW--DEVDRLC 609
           +KL+     P    +A+ KH  R +C T  L I+  K   +V+E F    W  D+VDR  
Sbjct: 223 SKLSQRNTDPHHEDEAAAKHVLRYLCGTINLSIIYMKTGELVKE-FADADWANDKVDRKS 281

Query: 610 Y 612
           Y
Sbjct: 282 Y 282


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,907,427
Number of Sequences: 53049
Number of extensions: 508348
Number of successful extensions: 1311
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)