Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0896
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78420-1|CAB01708.1|   77|Caenorhabditis elegans Hypothetical pr...    33   0.14 
U46670-4|AAC48175.1|  332|Caenorhabditis elegans Suppressor prot...    28   5.3  
U43891-1|AAB61087.1|  332|Caenorhabditis elegans SUP-10 precurso...    28   5.3  
AC103567-6|AAY55892.1|  179|Caenorhabditis elegans Hypothetical ...    28   5.3  
AC024206-5|AAF36051.2|  474|Caenorhabditis elegans Hypothetical ...    28   7.0  
AC006762-9|AAF60557.1|  121|Caenorhabditis elegans Hypothetical ...    28   7.0  
Z54238-8|CAA90998.3|  459|Caenorhabditis elegans Hypothetical pr...    27   9.2  
EU068466-1|ABU49431.1|  801|Caenorhabditis elegans PRO-3 protein.      27   9.2  
AL132948-40|CAD31812.3|  801|Caenorhabditis elegans Hypothetical...    27   9.2  

>Z78420-1|CAB01708.1|   77|Caenorhabditis elegans Hypothetical
           protein F45H11.2 protein.
          Length = 77

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 22/67 (32%), Positives = 31/67 (46%)
 Frame = +1

Query: 256 KQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNIKEG 435
           K L G E  +DI P+  +  +K  V  K  IP  QQ+         DD T   Y  +  G
Sbjct: 6   KTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADY-KVLGG 64

Query: 436 TKLNLVV 456
           + L+LV+
Sbjct: 65  SVLHLVL 71


>U46670-4|AAC48175.1|  332|Caenorhabditis elegans Suppressor protein
           10 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -1

Query: 249 IFILEIILTVLKYCVTKEPGVFNT*DGERRGSGTPRSQQRLMIQESVQRMNELKLV 82
           +FI  I+L  L YC   +   F   D    G GTP+S+   +I+E ++    + LV
Sbjct: 5   VFIFLIVLIDLIYCWNSKRSFFIP-DFLGSGDGTPKSKTESVIEERMEYGRMILLV 59


>U43891-1|AAB61087.1|  332|Caenorhabditis elegans SUP-10 precursor
           protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -1

Query: 249 IFILEIILTVLKYCVTKEPGVFNT*DGERRGSGTPRSQQRLMIQESVQRMNELKLV 82
           +FI  I+L  L YC   +   F   D    G GTP+S+   +I+E ++    + LV
Sbjct: 5   VFIFLIVLIDLIYCWNSKRSFFIP-DFLGSGDGTPKSKTESVIEERMEYGRMILLV 59


>AC103567-6|AAY55892.1|  179|Caenorhabditis elegans Hypothetical
           protein Y51F10.11 protein.
          Length = 179

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 20/53 (37%), Positives = 28/53 (52%)
 Frame = +1

Query: 442 LNLVVKKPESLYDASFKHYKRQVCQTRMLQILQNKLLRIVQEKFDKMSWDEVD 600
           LNLV +       A F+  K  V Q   L+ L N+ LRI+  ++D +S DE D
Sbjct: 46  LNLVHRIAFLQESARFRPEKFDVEQVMELRSLLNQFLRILSAEYDSLS-DEPD 97


>AC024206-5|AAF36051.2|  474|Caenorhabditis elegans Hypothetical
           protein Y74C9A.5 protein.
          Length = 474

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 418 PNIKEGTKLNLVVKKPESLYDASFKHYKRQVC 513
           P  K+  K+++V+    + + AS  HY R VC
Sbjct: 426 PGFKDSEKIHVVMMVAMARFQASMFHYTRAVC 457


>AC006762-9|AAF60557.1|  121|Caenorhabditis elegans Hypothetical
           protein Y42G9A.2 protein.
          Length = 121

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 267 LQLLTVIFILEIILTVLKY-CVTKEP 193
           +Q LT+IFI  +ILTV    C T+ P
Sbjct: 1   MQTLTLIFIFSVILTVFHVECATRAP 26


>Z54238-8|CAA90998.3|  459|Caenorhabditis elegans Hypothetical
           protein T28C6.7 protein.
          Length = 459

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/22 (45%), Positives = 19/22 (86%)
 Frame = +1

Query: 535 LQNKLLRIVQEKFDKMSWDEVD 600
           ++N+ +RIVQ+KF++M+ D+ D
Sbjct: 62  VKNQAMRIVQQKFEEMNRDKKD 83


>EU068466-1|ABU49431.1|  801|Caenorhabditis elegans PRO-3 protein.
          Length = 801

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 13  IDPYSLRLFSVIYFGLTSDIHRQHELKFIHPLN*FLNHK 129
           +D + +RLF +        IHR H L F   L+ FL  K
Sbjct: 354 MDNFEVRLFKIALCARIIGIHRLHTLSFYSYLHRFLQPK 392


>AL132948-40|CAD31812.3|  801|Caenorhabditis elegans Hypothetical
           protein Y39B6A.14 protein.
          Length = 801

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 13  IDPYSLRLFSVIYFGLTSDIHRQHELKFIHPLN*FLNHK 129
           +D + +RLF +        IHR H L F   L+ FL  K
Sbjct: 354 MDNFEVRLFKIALCARIIGIHRLHTLSFYSYLHRFLQPK 392


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,035,598
Number of Sequences: 27780
Number of extensions: 272080
Number of successful extensions: 646
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)