Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0896
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.2  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   4.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   4.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 598  DRLCYDWLLDEKRYKATSLH 657
            DRL Y W +D +RY    ++
Sbjct: 1103 DRLPYPWTMDNERYVKVDMY 1122


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -1

Query: 363 LLFDRYMQLSCNMPFQL*YEHTWIYIY*TFTSLQLLTVIFILEI 232
           + FDRY  +SC +  +L  +   + I  T+  +   TV+ +L++
Sbjct: 150 IAFDRYRTISCPIDGRLNSKQAAVIIAFTWFWVTPFTVLPLLKV 193


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -1

Query: 363 LLFDRYMQLSCNMPFQL*YEHTWIYIY*TFTSLQLLTVIFILEI 232
           + FDRY  +SC +  +L  +   + I  T+  +   TV+ +L++
Sbjct: 150 IAFDRYRTISCPIDGRLNSKQAAVIIAFTWFWVTPFTVLPLLKV 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,417
Number of Sequences: 438
Number of extensions: 3514
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)