Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0896
         (675 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31340.1 68414.m03835 ubiquitin family protein contains INTER...    40   0.002
At2g35635.1 68415.m04370 ubiquitin family protein contains INTER...    37   0.011
At5g42220.1 68418.m05139 ubiquitin family protein contains INTER...    34   0.100
At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to polyu...    28   5.0  
At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam ...    28   5.0  
At5g67570.1 68418.m08520 pentatricopeptide (PPR) repeat-containi...    27   8.7  
At5g54180.1 68418.m06746 mitochondrial transcription termination...    27   8.7  
At4g11960.1 68417.m01904 expressed protein hypothetical protein ...    27   8.7  

>At1g31340.1 68414.m03835 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 156

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 26/67 (38%), Positives = 34/67 (50%)
 Frame = +1

Query: 256 KQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNIKEG 435
           K L G E  IDI P+  I  +K  V  K  IP  QQ+         DD T + Y NI+ G
Sbjct: 82  KTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDY-NIEGG 140

Query: 436 TKLNLVV 456
           + L+LV+
Sbjct: 141 SVLHLVL 147


>At2g35635.1 68415.m04370 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 154

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 25/67 (37%), Positives = 33/67 (49%)
 Frame = +1

Query: 256 KQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNIKEG 435
           K L G E  IDI P+  I  +K  V  K  IP  QQ+         DD T + Y  I+ G
Sbjct: 82  KTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYA-IEGG 140

Query: 436 TKLNLVV 456
           + L+LV+
Sbjct: 141 SVLHLVL 147


>At5g42220.1 68418.m05139 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 879

 Score = 33.9 bits (74), Expect = 0.100
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = +1

Query: 244 ENNRKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPN 423
           E N K L        +  +  +   K  +A +  +PV QQ+         DDH +  Y +
Sbjct: 25  ELNIKTLDSRTYTFQVNKNETVLLFKEKIASETGVPVGQQRLIFRGRVLKDDHPLSEY-H 83

Query: 424 IKEGTKLNLVVKKP 465
           ++ G  L+L+V++P
Sbjct: 84  LENGHTLHLIVRQP 97


>At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to
           polyubiquitin (ubq8) GI:870793, GB:L05917 [Arabidopsis
           thaliana] (Genetics 139 (2), 921-939 (1995))
          Length = 631

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = +1

Query: 283 IDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNIKEGTKLNLVVK 459
           +D+  S  I  +K  +  K  IP++QQ+         D  T+  Y NI++ + L+LV++
Sbjct: 17  LDVETSDSIHNVKAKIQNKEGIPLDQQRLIFAGKQLEDGLTLADY-NIQKESTLHLVLR 74


>At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam
           profile: PF00240 ubiquitin family
          Length = 158

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = +1

Query: 256 KQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNIKEG 435
           K L G   ++++     I  +K  +  K  IPV+QQ+         D  T+  Y NI+  
Sbjct: 91  KTLTGRRIVLEVENCDTIENIKAKIQDKQGIPVDQQRLIFKGKQLEDGLTLADY-NIQND 149

Query: 436 TKLNLV 453
           + L+L+
Sbjct: 150 SILHLI 155


>At5g67570.1 68418.m08520 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 611

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = +1

Query: 490 KHYK--RQVCQTRMLQILQNKLLRIVQEKFDKMSWDEVDRLCYDWLLDEKRYK 642
           KH+K  R + Q+  LQ  ++++L+IV     K SW +   + + W+  +K+ K
Sbjct: 200 KHWKFVRMMNQSG-LQFTEDQMLKIVDRLGRKQSWKQASAVVH-WVYSDKKRK 250


>At5g54180.1 68418.m06746 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 500

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 478 DASFKHYKRQVCQTRMLQILQNKLLRIVQEKFDKMSWDEVDRLC 609
           D+  KH   +  ++R   +  NKLL +  E+F K + D ++ +C
Sbjct: 457 DSRIKHRYEEKLKSRGENMSLNKLLTVSAERFSKAA-DNIEMIC 499


>At4g11960.1 68417.m01904 expressed protein hypothetical protein
           F7H19.70 - Arabidopsis thaliana, PID:e1310057
          Length = 313

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 322 FSTLI*AYLDIYLLNIHLPATAYGYFHFGNNFDGFKV 212
           +S L   Y  ++LLN+     A G F F ++  GF++
Sbjct: 180 YSDLAIDYFKMFLLNVPATVVALGLFFFLDDITGFEI 216


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,975,086
Number of Sequences: 28952
Number of extensions: 242904
Number of successful extensions: 617
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)