SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0895
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08310.1 68417.m01372 expressed protein glutamic acid-rich pr...    32   0.40 
At4g02710.1 68417.m00366 kinase interacting family protein simil...    29   2.1  
At3g19900.1 68416.m02520 expressed protein                             29   2.1  
At4g19230.2 68417.m02837 cytochrome P450 family protein cytochro...    29   2.8  
At5g64710.2 68418.m08135 expressed protein contains Pfam profile...    28   4.9  
At5g64710.1 68418.m08134 expressed protein contains Pfam profile...    28   4.9  
At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica...    28   4.9  
At1g77270.1 68414.m08999 expressed protein                             28   4.9  
At2g04230.1 68415.m00410 F-box family protein contains F-box dom...    27   8.6  

>At4g08310.1 68417.m01372 expressed protein glutamic acid-rich
           protein precursor - Plasmodium falciparum, PIR2:A54514
          Length = 504

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = +3

Query: 69  DEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGK 245
           D  K  +K+H   CL+  + DE   N L+T + K +  P+K+ A   L K     KDGK
Sbjct: 77  DVHKSFVKQHLVQCLAGAENDETSENSLET-EKKDDVTPVKEAA--ELSKEHTTKKDGK 132


>At4g02710.1 68417.m00366 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 1111

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 425 DYVFTRKERASGLSRGSISHNSXLFGEGCCL 333
           DYVFT +E A  +S+G+   +  L  EG CL
Sbjct: 781 DYVFTHRESAGEVSKGADLMDEFLKLEGMCL 811


>At3g19900.1 68416.m02520 expressed protein
          Length = 222

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -1

Query: 155 LQFVHQLFISFRLGETVGSVFLQVLLLLICEGLSQDNADDEHDKSLHD 12
           L F H L +    G+T    F ++  ++  EG + DN+DDE  +SL D
Sbjct: 42  LAFSHSLCLKTTYGKTDRRKFSRICSIVDDEG-NLDNSDDEEKESLDD 88


>At4g19230.2 68417.m02837 cytochrome P450 family protein cytochrome
           P450, Arabidopsis thaliana; supported by cDNA:
           gi_15293092_gb_AY050980.1_
          Length = 484

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -1

Query: 404 ERASGLSRGSISHNSXLFGEGCCLCWPGKRQS 309
           ERA+G S G    +S      C LCWPG R+S
Sbjct: 439 ERATGFSMG----HSRFPKTDCPLCWPGSRRS 466


>At5g64710.2 68418.m08135 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 716

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = +3

Query: 45  VVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLI--- 215
           VV  + +    K+N K  + +     ++ ++ V  +K  D K + EP+K   L +     
Sbjct: 237 VVSVEKMCQNMKQNDKDVKEESHQLQESSQEFVQVMKLMDVKAKEEPVKANQLAITAVDD 296

Query: 216 KSQLMTKDGKFKK 254
            S    KDG  KK
Sbjct: 297 VSSFEEKDGFLKK 309


>At5g64710.1 68418.m08134 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 841

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = +3

Query: 45  VVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLI--- 215
           VV  + +    K+N K  + +     ++ ++ V  +K  D K + EP+K   L +     
Sbjct: 362 VVSVEKMCQNMKQNDKDVKEESHQLQESSQEFVQVMKLMDVKAKEEPVKANQLAITAVDD 421

Query: 216 KSQLMTKDGKFKK 254
            S    KDG  KK
Sbjct: 422 VSSFEEKDGFLKK 434


>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
            domain-containing protein similar to transcriptional
            activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
            profiles PF00271: Helicase conserved C-terminal domain,
            PF00176: SNF2 family N-terminal domain
          Length = 2055

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +3

Query: 105  DCLSETKADEQLV--NKLK-TGDFKTENEPLKKYALCMLIKSQLMTKDGKFKKTSLW 266
            D L  +K  + +V  N+LK T   KT     KK+   M IK  LM K  K KK +LW
Sbjct: 1610 DELEPSKPSDSMVVDNELKLTNRGKTVG---KKFITSMPIKRVLMIKPEKLKKGNLW 1663


>At1g77270.1 68414.m08999 expressed protein
          Length = 682

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = +3

Query: 90  KKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ---LMTKDGKFKKTS 260
           KK +   +++T   ++++      D  T+    K  +LC  + +    L+ +DGK K+T+
Sbjct: 174 KKPKKSVVAKTIVWQEIIEIESATDTDTDEVGGKTLSLCGKVDASGDDLLARDGKTKRTN 233

Query: 261 LWLKCL 278
           L + C+
Sbjct: 234 LQIVCV 239


>At2g04230.1 68415.m00410 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 448

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 278 NAEDKLKVEKLIDACLANKGNSPHQTXWNYVKCYHE 385
           ++  KL++ KL D  L +   +P +  WN  KC  E
Sbjct: 333 DSSPKLQILKLTDVYLHDNKTNPDERKWNPPKCAPE 368


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,563,388
Number of Sequences: 28952
Number of extensions: 274874
Number of successful extensions: 714
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -