BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--0894 (673 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 26 4.3 SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 26 4.3 SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 26 4.3 SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc... 26 5.7 SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc... 26 5.7 SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.5 SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|... 25 7.5 SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom... 25 7.5 SPAC5H10.05c |||FAD binding oxidoreductasde |Schizosaccharomyces... 25 7.5 SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 25 9.9 SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces... 25 9.9 >SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1729 Score = 26.2 bits (55), Expect = 4.3 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = -3 Query: 638 SFLKYCEWIGFLTVSSIKSYTF-NLNLTLQLRVI 540 +F+ +C WI L ++SY F LNL +R + Sbjct: 502 AFVSWCLWITVLVAKFLESYFFLTLNLADSIRFL 535 >SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 425 Score = 26.2 bits (55), Expect = 4.3 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +3 Query: 6 RAEPKPTSPARGAPCRPTNEALARR 80 + EP P S A +P + + EALA R Sbjct: 62 KKEPSPASSASASPVKKSAEALAER 86 >SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 474 Score = 26.2 bits (55), Expect = 4.3 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = +3 Query: 282 KALGVDFILIVIICVNVSPKYGSDTLINL 368 K LG+DF + +++C +YGS+ L +L Sbjct: 147 KELGIDFPVNLLMCFEGMEEYGSEGLEDL 175 >SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc|Schizosaccharomyces pombe|chr 2|||Manual Length = 181 Score = 25.8 bits (54), Expect = 5.7 Identities = 16/61 (26%), Positives = 27/61 (44%) Frame = -1 Query: 559 LYSYELSNESPHQNPRLHGIAPTITKRFKSTVLKSXXXXXIDNDSRIAGVLWRNVDTRDL 380 L S S + PR K +T+LKS S++ G +WRN +++++ Sbjct: 90 LKSLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN-ESKEV 148 Query: 379 R 377 R Sbjct: 149 R 149 >SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc|Schizosaccharomyces pombe|chr 2|||Manual Length = 181 Score = 25.8 bits (54), Expect = 5.7 Identities = 16/61 (26%), Positives = 27/61 (44%) Frame = -1 Query: 559 LYSYELSNESPHQNPRLHGIAPTITKRFKSTVLKSXXXXXIDNDSRIAGVLWRNVDTRDL 380 L S S + PR K +T+LKS S++ G +WRN +++++ Sbjct: 90 LKSLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN-ESKEV 148 Query: 379 R 377 R Sbjct: 149 R 149 >SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 485 Score = 25.4 bits (53), Expect = 7.5 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +1 Query: 601 VKNPIHSQYFKKDLSGKALSIRH 669 ++NPI S YF +DLS S H Sbjct: 5 IQNPIESSYFVEDLSAVGNSQLH 27 >SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 537 Score = 25.4 bits (53), Expect = 7.5 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = +1 Query: 520 FDEATHSITRSCKVRLRL 573 FD HS++ SCK+ L L Sbjct: 99 FDRVKHSVSNSCKLHLSL 116 >SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 562 Score = 25.4 bits (53), Expect = 7.5 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%) Frame = -1 Query: 589 LSPIHSTLI*LYSYELSN-ESPHQNPRLH 506 LS IH TL+ LYS E+ N S +Q P ++ Sbjct: 502 LSYIHQTLVFLYSLEIQNLLSQNQFPTVY 530 >SPAC5H10.05c |||FAD binding oxidoreductasde |Schizosaccharomyces pombe|chr 1|||Manual Length = 196 Score = 25.4 bits (53), Expect = 7.5 Identities = 12/51 (23%), Positives = 22/51 (43%) Frame = -1 Query: 547 ELSNESPHQNPRLHGIAPTITKRFKSTVLKSXXXXXIDNDSRIAGVLWRNV 395 E ++ N LH +A + TV ++ D ++ + +LW NV Sbjct: 11 EFAHSQGKFNKTLHNVAKDTLIQLGHTVQETVVDEGYDENTEVEKILWANV 61 >SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 798 Score = 25.0 bits (52), Expect = 9.9 Identities = 8/20 (40%), Positives = 15/20 (75%) Frame = +1 Query: 7 ELSQSQPLLHAAHPADQQTR 66 +LS+ P LH++ P+D ++R Sbjct: 547 DLSKKHPALHSSRPSDSRSR 566 >SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 143 Score = 25.0 bits (52), Expect = 9.9 Identities = 10/23 (43%), Positives = 12/23 (52%) Frame = -3 Query: 101 DGGSVTTTPRQSLVCWSAGCAAC 33 DG V P + L C +GCA C Sbjct: 50 DGIRVPPKPEEPLNCCQSGCAIC 72 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,625,168 Number of Sequences: 5004 Number of extensions: 49702 Number of successful extensions: 107 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 105 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 107 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 307866294 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -