Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0894
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0350 + 22234632-22235145,22235277-22236209,22237253-222373...    29   3.4  
05_06_0142 + 25968828-25969157,25969283-25969447,25969564-25969884     28   7.8  

>02_04_0350 +
           22234632-22235145,22235277-22236209,22237253-22237340,
           22237859-22237865
          Length = 513

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 95  GSVTTTPRQSLVCWSAGCAACRRGWLWL 12
           GS+TT     LV ++ G A C  G+LW+
Sbjct: 305 GSITTMSNDELVEFAWGLANCGHGFLWI 332


>05_06_0142 + 25968828-25969157,25969283-25969447,25969564-25969884
          Length = 271

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 51  RPTNEALARRGRHGTTVAYIVDDSGS 128
           RP+  A  RR RHGT VAY+  +  S
Sbjct: 22  RPSPSAPNRRRRHGTVVAYMEPNPNS 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,276,016
Number of Sequences: 37544
Number of extensions: 297222
Number of successful extensions: 716
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)