Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0894
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24730| Best HMM Match : Kinesin (HMM E-Value=2.3e-17)               30   1.5  
SB_9672| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  
SB_23434| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_7996| Best HMM Match : efhand (HMM E-Value=1.4)                     28   7.9  

>SB_24730| Best HMM Match : Kinesin (HMM E-Value=2.3e-17)
          Length = 602

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 273 LLSKALGVDFILIVIICVNVSPKYGSDTLINLGYCLRS 386
           LL+ +LG D + ++I C++ S    SDTL  L Y  R+
Sbjct: 127 LLADSLGGDGVTLMIACISPSSSVVSDTLNTLRYANRA 164


>SB_9672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -3

Query: 527 SSKSTFTWNRTH 492
           SSK TFTW+RTH
Sbjct: 164 SSKQTFTWSRTH 175


>SB_23434| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 65 LVCWSAGCAACRRGWLWLSSC 3
          ++C     A C RGW+W + C
Sbjct: 1  MICGWVVAAECGRGWVWAAEC 21


>SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1033

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -3

Query: 98  GGSVTTTPRQSLVCWSAGCAACRRGWLWLSSC 3
           G   +T  R +  CW   CA  R G  W + C
Sbjct: 280 GHYFSTRDRDNDACWYESCALTRDGAWWFNCC 311


>SB_7996| Best HMM Match : efhand (HMM E-Value=1.4)
          Length = 570

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +3

Query: 306 LIVIICVNVSPKYG----SDTLINLGYCLRSLVSTFLQRTPAIRESL 434
           L V ICV +  KYG     D L N G+C     +T  ++  A+ + +
Sbjct: 390 LQVSICVTLDHKYGLRDLIDLLSNFGFCASYFEATLYKKNAAVTQGV 436


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,305,998
Number of Sequences: 59808
Number of extensions: 357692
Number of successful extensions: 1008
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)