Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0893
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    32   0.088
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    31   0.15 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   4.4  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    25   7.6  

>SPAC2F7.03c |pom1||DYRK family protein kinase
            Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 31.9 bits (69), Expect = 0.088
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +1

Query: 16   RRP--APPEIKLRRPPPMHHKVNPYPLP-MPNPHNSHGMKKP-SPSAQPNH 156
            RRP  AP   K  RPP +     P PLP +P  +N H +  P  PS Q ++
Sbjct: 1002 RRPNTAPARQKFARPPNIETAPIPRPLPNLPMEYNDHTLPSPKEPSNQASN 1052


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 52  PPPMHHKVNPYPLPMPNPHNSHGMKKPSP 138
           PPPMHHK   + +P P  H+  G   P P
Sbjct: 209 PPPMHHKPGEH-MPPPPMHHEPGEHMPPP 236



 Score = 29.5 bits (63), Expect = 0.47
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 52  PPPMHHKVNPYPLPMPNPHNSHGMKKPSP 138
           PPPMHH+   + +P P  H+  G   P P
Sbjct: 222 PPPMHHEPGEH-MPPPPMHHEPGEHMPPP 249



 Score = 29.5 bits (63), Expect = 0.47
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 52  PPPMHHKVNPYPLPMPNPHNSHGMKKPSP 138
           PPPMHH+   + +P P  H+  G   P P
Sbjct: 235 PPPMHHEPGEH-MPPPPMHHEPGEHMPPP 262



 Score = 29.5 bits (63), Expect = 0.47
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 52  PPPMHHKVNPYPLPMPNPHNSHGMKKPSP 138
           PPPMHH+   + +P P  H+  G   P P
Sbjct: 248 PPPMHHEPGEH-MPPPPMHHEPGEHMPPP 275



 Score = 29.5 bits (63), Expect = 0.47
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 52  PPPMHHKVNPYPLPMPNPHNSHGMKKPSP 138
           PPPMHH+   + +P P  H+  G   P P
Sbjct: 261 PPPMHHEPGEH-MPPPPMHHEPGEHMPPP 288



 Score = 29.5 bits (63), Expect = 0.47
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 52  PPPMHHKVNPYPLPMPNPHNSHGMKKPSP 138
           PPPMHH+   + +P P  H+  G   P P
Sbjct: 274 PPPMHHEPGEH-MPPPPMHHEPGEHMPPP 301



 Score = 29.5 bits (63), Expect = 0.47
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 52  PPPMHHKVNPYPLPMPNPHNSHGMKKPSP 138
           PPPMHH+   + +P P  H+  G   P P
Sbjct: 287 PPPMHHEPGEH-MPPPPMHHEPGEHMPPP 314



 Score = 29.5 bits (63), Expect = 0.47
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 52  PPPMHHKVNPYPLPMPNPHNSHGMKKPSP 138
           PPPMHH+   + +P P  H+  G   P P
Sbjct: 300 PPPMHHEPGEH-MPPPPMHHEPGEHMPPP 327



 Score = 29.5 bits (63), Expect = 0.47
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 52  PPPMHHKVNPYPLPMPNPHNSHGMKKPSP 138
           PPPMHH+   + +P P  H+  G   P P
Sbjct: 313 PPPMHHEPGEH-MPPPPMHHEPGEHMPPP 340



 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 52  PPPMHHKVNPYPLPMPNPHN 111
           PPPMHH+   +  P P  H+
Sbjct: 326 PPPMHHEPGEHMPPPPFKHH 345


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +1

Query: 19  RPAPPEIKLRRPPPMHHKVNPYPLPMPNPHNSHGMKKPSPSA 144
           RP+ P       PP+  K  P P  +P P       K  PSA
Sbjct: 146 RPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSA 187


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 212 GTLGSRGRFNGIGLLFGCLW 153
           GT+GSR     I + FG LW
Sbjct: 4   GTMGSRAELLAISIQFGGLW 23


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,671,731
Number of Sequences: 5004
Number of extensions: 54499
Number of successful extensions: 216
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)