Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0893
(678 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26) 35 0.053
SB_33576| Best HMM Match : Pentaxin (HMM E-Value=1.3e-06) 32 0.37
SB_16481| Best HMM Match : HMG_box (HMM E-Value=1.2e-08) 32 0.49
SB_53632| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_30029| Best HMM Match : Extensin_2 (HMM E-Value=0.45) 30 1.5
SB_59764| Best HMM Match : Vicilin_N (HMM E-Value=0.5) 30 2.0
SB_37033| Best HMM Match : Annexin (HMM E-Value=0) 30 2.0
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 30 2.0
SB_58015| Best HMM Match : rve (HMM E-Value=0.00087) 29 2.6
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_24760| Best HMM Match : PT (HMM E-Value=0.17) 29 3.5
SB_45534| Best HMM Match : 7tm_1 (HMM E-Value=1e-10) 29 4.6
SB_30900| Best HMM Match : Extensin_2 (HMM E-Value=0.17) 29 4.6
SB_54456| Best HMM Match : EGF (HMM E-Value=2.3e-31) 29 4.6
SB_50893| Best HMM Match : SH3_1 (HMM E-Value=2e-33) 28 6.0
SB_50183| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 6.0
SB_19709| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0) 28 8.0
SB_33909| Best HMM Match : FH2 (HMM E-Value=0) 28 8.0
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 28 8.0
SB_25792| Best HMM Match : Extensin_2 (HMM E-Value=1) 28 8.0
>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
Length = 2157
Score = 35.1 bits (77), Expect = 0.053
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 22 PAPPEIKLRRPPPMHHKVNPYPLPMPNPHNSH 117
P P + +R P PMH + +P P+P P PH H
Sbjct: 1093 PVPVPVPVRVPVPMHQQ-SPLPMPRPIPHAPH 1123
>SB_33576| Best HMM Match : Pentaxin (HMM E-Value=1.3e-06)
Length = 799
Score = 32.3 bits (70), Expect = 0.37
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Frame = +3
Query: 267 HQHLLK--NDPNPTQQTPLSTITANNKHGP-----NNMHLPVQTLSVGQSDIIVNQVVKS 425
HQH N PN + L N G +N+ P T+++ Q + + +
Sbjct: 215 HQHSTSALNVPNFSGTITLDQHNVPNSSGTITLDQHNVPHPSGTITLDQHSTYLTPAIST 274
Query: 426 QITLPGSNDAIAQHSIPQPYHKSGQIIL 509
Q TLP + QH++P H SG I L
Sbjct: 275 QSTLPSGTVTLDQHNVP---HPSGTITL 299
>SB_16481| Best HMM Match : HMG_box (HMM E-Value=1.2e-08)
Length = 271
Score = 31.9 bits (69), Expect = 0.49
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 28 PPEIKLRRPPPMHHKVNP-YPLPMPNPHNSHGMKKPSPSAQ 147
P K+ PP HH V+P YP+ P+ N + SPS++
Sbjct: 120 PMYSKINGGPPFHHSVSPGYPVIYPSVSNGGNVHTGSPSSR 160
>SB_53632| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 243
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +1
Query: 4 HEHFRRPAPPEIKLRRPPPMHHKVNPYPLPMP--NPHNSHGMKKPS-PSAQPNH 156
H+H+ A P ++ RP + + LP P +PH SH ++ P QP H
Sbjct: 96 HKHYGTGANPYPRISRPTTAQVQQSNIVLPFPKESPHTSHMSRQAMFPRPQPYH 149
>SB_30029| Best HMM Match : Extensin_2 (HMM E-Value=0.45)
Length = 622
Score = 30.3 bits (65), Expect = 1.5
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 2/119 (1%)
Frame = +3
Query: 258 GQIHQHLLKNDPNPTQQTPLSTITANNKHGPNNMHLPVQT-LSVGQSD-IIVNQVVKSQI 431
GQ H +++ P QT NN P +M P + + Q + NQV KSQ
Sbjct: 327 GQPHPYMMSPSMKPMPQTQQYY---NNMGMPPSMMGPSHNPMGMPQRQGTMANQVAKSQP 383
Query: 432 TLPGSNDAIAQHSIPQPYHKSGQIILGSLWNTLFL*TNK*FKPNHTSQGHLQHHSPVLP 608
+ Q PQP + Q+ ++ + + PN S+ +QHH P+LP
Sbjct: 384 DMTPYQQQQYQQRFPQPNYPP-QL-------PPYMASRQSQNPNPMSRVPMQHHQPILP 434
>SB_59764| Best HMM Match : Vicilin_N (HMM E-Value=0.5)
Length = 302
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +1
Query: 493 PVK*FWEAYGTPCSFRPTNDSNQTTRHKDTXNTTAQFFQTSNPRVKLENELLSQNG 660
PVK ++ PC +SN ++K+ N Q + S +K E E SQNG
Sbjct: 122 PVKLDDKSTKKPCKEEQNTESNAPQKNKEKVNDNKQRKRQSEEGIKGEAETESQNG 177
>SB_37033| Best HMM Match : Annexin (HMM E-Value=0)
Length = 287
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Frame = +1
Query: 19 RPAPPEIKLRRPPPM-HHKVNP-----YPLPMPNPHNSHGMKKPSPSAQP 150
RP P ++PPP+ + P P+PMP P+ S G P A P
Sbjct: 20 RPGAPPPMPQQPPPLGFDAMGPPQPGGMPMPMPGPYPSSGYPTSVPGAAP 69
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/45 (37%), Positives = 18/45 (40%)
Frame = +1
Query: 19 RPAPPEIKLRRPPPMHHKVNPYPLPMPNPHNSHGMKKPSPSAQPN 153
RP PP PPP P P P P+P K P P PN
Sbjct: 210 RP-PPSPPPPPPPPSPSPPRPPPPPPPSPPRPLAAKLPEPPPIPN 253
>SB_58015| Best HMM Match : rve (HMM E-Value=0.00087)
Length = 1333
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/54 (27%), Positives = 31/54 (57%)
Frame = +3
Query: 270 QHLLKNDPNPTQQTPLSTITANNKHGPNNMHLPVQTLSVGQSDIIVNQVVKSQI 431
+HL+KN N T++ S++ + + P MH ++ SV +SD ++++ +I
Sbjct: 199 KHLVKNVSNATEKNHFSSMCKSKEVPPKQMH-DLEKDSVSESDDSIDELFFGEI 251
>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 76 NPYPLPMPNPHNSHGMKKPSPSAQPN 153
NP P P P+PH S PSP+ PN
Sbjct: 472 NPSPRPHPSPHPS---SNPSPNPSPN 494
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 49 RPPPMHH-KVNPYPLPMPNPHNSHGMKKPSPSAQPN 153
RP P H NP P P PNP + P+PS+ P+
Sbjct: 476 RPHPSPHPSSNPSPNPSPNPSSD---PSPNPSSNPS 508
>SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1486
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = +1
Query: 49 RPPPM-HHKVN--PYPLPMP--NPHNSHGMKKPSPSAQP 150
RPPPM HH +N P P MP P G+ P P +P
Sbjct: 1223 RPPPMGHHMMNMPPPPPAMPPDGPPKFMGLPPPPPGMRP 1261
>SB_24760| Best HMM Match : PT (HMM E-Value=0.17)
Length = 422
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 55 PPMHHKVNPYPLPMPNPHNSHGMKKPSPSAQP 150
P H P+P P PH SHG P PS+ P
Sbjct: 78 PHPSHGPGPHPSHGPGPHPSHG-PGPHPSSGP 108
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +1
Query: 79 PYPLPMPNPHNSHGMKKPSPSAQP 150
PYP P PH SHG P PS P
Sbjct: 70 PYPTDGPGPHPSHG-PGPHPSHGP 92
>SB_45534| Best HMM Match : 7tm_1 (HMM E-Value=1e-10)
Length = 548
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/73 (21%), Positives = 31/73 (42%)
Frame = +3
Query: 279 LKNDPNPTQQTPLSTITANNKHGPNNMHLPVQTLSVGQSDIIVNQVVKSQITLPGSNDAI 458
+ D N + P I A NK + + T + ++ +++ + PG+N ++
Sbjct: 38 VSRDENTDYRLPAGYI-AKNKRISKKLQTWLLTFTFVNTNYCYLKLLLKILKCPGNNGSL 96
Query: 459 AQHSIPQPYHKSG 497
+P PY K G
Sbjct: 97 CGQVVPSPYQKQG 109
>SB_30900| Best HMM Match : Extensin_2 (HMM E-Value=0.17)
Length = 473
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 1 RHEHFRRPAPPEIKLRRPPPMHHKVNPYPLPMPNP 105
RH H R PAP + HH+ +P P P P P
Sbjct: 422 RHHHRRHPAPTPGTITANTRHHHRRHPAPSP-PAP 455
>SB_54456| Best HMM Match : EGF (HMM E-Value=2.3e-31)
Length = 491
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 4 HEHFRRPAPPEIKLRRPPPMHHKVN-PYPLPMPNPHNSHGMKKPSP 138
H R P P + RP +HH V PYP+P+ P + +P P
Sbjct: 277 HHTERIPFPVPFVVNRP--IHHTVQVPYPVPVRGPSRLVIINRPVP 320
>SB_50893| Best HMM Match : SH3_1 (HMM E-Value=2e-33)
Length = 665
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +1
Query: 22 PAPPEIKLRRPPPM-HHKVNPYPLPMPNPHNSHGMKKPSP 138
PAP +++ R PPP + PLP + MKK P
Sbjct: 297 PAPKQVEQRAPPPQPSEEKQDIPLPSKPTAGARDMKKVLP 336
>SB_50183| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 717
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +1
Query: 49 RPPPMHHKVNPYPLPMPNPHNSHGMKKPSPSAQPN 153
+P P+HH + P+P + +HG +P+ + P+
Sbjct: 207 QPSPVHHVIINNPMPPSHLLPAHGWPRPTIAVDPH 241
>SB_19709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 613
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 52 PPPMHHKVNPYPLPMPNPHNSHGMKKP 132
PPP H VN +P P P + G KP
Sbjct: 587 PPPPAHHVNKPGVPPPPPPSKTGKSKP 613
>SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 915
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 55 PPMHHKVNPYPLPMPNPHNSHGMKKPSPSAQPNHK 159
PP+ +++PYP P+P+ +N + SP+ + N +
Sbjct: 868 PPLGTRLSPYPSPLPDRNNHLSL---SPALKENRR 899
>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1063
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +1
Query: 52 PPPMHHKVNPYPLPMPNPH-NSHGMKKPSPSAQP 150
PPP+ P P P P P G+ P PS QP
Sbjct: 701 PPPLLSGTLPMPPPPPPPPPGCAGLPPPPPSPQP 734
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +1
Query: 22 PAPPEIKLRRPPPMHHKVNPYPLPMPNPHNSHGMKKPSPSAQP 150
P PP + PPP ++ P P P +S PS A P
Sbjct: 305 PPPPPSRGSAPPPPPARMGTAPPPPPPSRSSQRPPPPSRGAPP 347
>SB_25792| Best HMM Match : Extensin_2 (HMM E-Value=1)
Length = 440
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 49 RPPPMHHKVNPYPLPM-PNPHNSHGMKKPSPSAQPNH 156
RP P+ +P+ L P+P + +++PSPS+ P H
Sbjct: 19 RPQPLR-ATHPFSLLRNPSPTRGNPIRRPSPSSSPVH 54
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,228,559
Number of Sequences: 59808
Number of extensions: 431111
Number of successful extensions: 1570
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1498
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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