Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0893
(678 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical... 34 0.11
Z54235-7|CAA90974.3| 611|Caenorhabditis elegans Hypothetical pr... 33 0.25
U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical pr... 32 0.33
U23139-1|AAK31493.2| 513|Caenorhabditis elegans Hypothetical pr... 32 0.43
Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical pr... 31 0.76
Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical pr... 31 0.76
Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical pr... 31 0.76
Z72511-3|CAA96657.1| 610|Caenorhabditis elegans Hypothetical pr... 31 1.00
AL117204-14|CAB55155.1| 264|Caenorhabditis elegans Hypothetical... 31 1.00
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 30 1.3
AF067209-1|AAC16982.2| 553|Caenorhabditis elegans Warthog (hedg... 30 1.7
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 2.3
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 2.3
U50197-7|AAM54189.1| 796|Caenorhabditis elegans Abnormal dauer ... 29 3.0
U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer ... 29 3.0
U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer ... 29 3.0
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 29 3.0
AF005205-1|AAB61748.1| 796|Caenorhabditis elegans DAF-3 protein. 29 3.0
AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signali... 29 3.0
AC024817-53|AAP13744.1| 549|Caenorhabditis elegans Hypothetical... 29 3.0
AC024817-52|AAF59568.4| 611|Caenorhabditis elegans Hypothetical... 29 3.0
Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical pr... 29 4.0
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 29 4.0
AF164625-1|AAD47816.1| 944|Caenorhabditis elegans tandem-array-... 29 4.0
AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array ... 29 4.0
AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacti... 29 4.0
U00066-9|AAA50743.3| 780|Caenorhabditis elegans Mediator protei... 26 4.5
U00066-8|AAM54164.1| 777|Caenorhabditis elegans Mediator protei... 26 4.5
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as... 28 5.3
AL008867-2|CAE17750.1| 763|Caenorhabditis elegans Hypothetical ... 28 5.3
AF063007-6|AAC16427.2| 523|Caenorhabditis elegans Taf (tbp-asso... 28 5.3
Z73898-9|CAA98066.2| 913|Caenorhabditis elegans Hypothetical pr... 28 7.0
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 28 7.0
AL032630-1|CAA21558.1| 366|Caenorhabditis elegans Hypothetical ... 28 7.0
AF043698-2|AAB97559.3| 700|Caenorhabditis elegans Hypothetical ... 28 7.0
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 28 7.0
U53338-7|AAA96195.2| 342|Caenorhabditis elegans Lunapark (membr... 27 9.3
U10402-7|AAA19069.1| 192|Caenorhabditis elegans C. elegans neur... 27 9.3
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so... 27 9.3
>AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical
protein Y22D7AR.1 protein.
Length = 350
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +1
Query: 19 RPAP-PEIKLRRPPPMHHKVNPYPLPMPNPH-NSHGMKKPSPSAQPNHK 159
+P P P+ KL+ P K+ P P P P P N KP P +PN +
Sbjct: 250 KPEPKPKTKLKSEPKPKPKLKPKPKPNPKPEPNPMPELKPKPKHKPNSR 298
Score = 33.1 bits (72), Expect = 0.19
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Frame = +1
Query: 19 RPAPPEIKLRRPPPMHH---KVNPYPLPMPNPHNSHGMK---KPSPSAQPNHK 159
+P P + +P P H + P P P P P + K +P P +PNHK
Sbjct: 278 KPEPNPMPELKPKPKHKPNSRPKPNPRPKPKPRSKPNPKPKPRPKPELKPNHK 330
Score = 30.7 bits (66), Expect = 1.00
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 19 RPAP-PEIKLRRPPPMHHKVNPYPLPMPNPHNSHGMK-KPSPSAQPNHK 159
+P P P+ K + P K P P P PNP+ K KP P +P K
Sbjct: 206 KPKPEPKPKPKPEPKPKPKPKPKPKPKPNPNPKPEPKPKPKPKPKPEPK 254
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +1
Query: 43 LRRPPPMHHKVNPYPLPMPNPHNSHGMK-KPSPSAQPNHK 159
L+ P + K NP P P P P K KP P +P K
Sbjct: 151 LKNEPKLKSKPNPKPEPKPKPKPEPKPKPKPDPKPKPKPK 190
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +1
Query: 19 RPAP-PEIKLRRPPPMHHKVNPYPLPMPNPHNSHGMKKPSPSAQPNHK 159
+P P P+ K + P K P P P PNP KP P +P K
Sbjct: 170 KPKPEPKPKPKPDPKPKPKPKPKPKPKPNP-KPEPKPKPKPEPKPKPK 216
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Frame = +1
Query: 31 PEIKLRRPPPMHHKVNPYPLPMPNPHNSHGMK---KPSPSAQPNHK 159
P++K + P K P P P P P K KP P +PN K
Sbjct: 155 PKLKSKPNPKPEPKPKPKPEPKPKPKPDPKPKPKPKPKPKPKPNPK 200
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +1
Query: 19 RPAP-PEIKLRRPPPMHHKVNPYPLPMPNPHNSHGMKKPSPSAQPNHK 159
+P P PE K + P K P P P P P KP+P+ +P K
Sbjct: 196 KPNPKPEPKPKPKPEPKPKPKPEPKPKPKP-KPKPKPKPNPNPKPEPK 242
>Z54235-7|CAA90974.3| 611|Caenorhabditis elegans Hypothetical
protein C09G9.4 protein.
Length = 611
Score = 32.7 bits (71), Expect = 0.25
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +1
Query: 19 RPAPPEIKLRRPPPMHHKVNPYPLPMPNPHNSHGMKKPSPSAQPNHKQ 162
RP PPE K +R PP K + P PM N + + + A N Q
Sbjct: 55 RPPPPEPKPQRSPPDREKESKDPQPMNNNRSKEHVLRSENQAPTNEIQ 102
>U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical
protein T26C11.2 protein.
Length = 343
Score = 32.3 bits (70), Expect = 0.33
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 7 EHFRRPAPPEIKLRRPPPMHHKVNPYPLPMPNPHNSHGMKKPSPSAQP 150
+H +P P + +P P+ K P+P PMP P H KP P +P
Sbjct: 189 KHKPKPFPKPMLFPKPMPIP-KPMPFPKPMPKPMPKH---KPKPFPKP 232
Score = 31.1 bits (67), Expect = 0.76
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = +1
Query: 22 PAPPEIKLRRPPPMHH-KVNPYPLPMPNPHNSHGMKKPSPSAQPNHK 159
P P +P P K P+P PMP P KP P P HK
Sbjct: 10 PKPKSEPFPKPMPKSKPKSEPFPSPMPFP-KPMPKPKPKPKPMPKHK 55
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +1
Query: 7 EHFRRPAPPEIKLRRPPPMHHKVNPYPLPMPNPHNSHGMKKPSPSAQPNHK 159
+H +P P + +P P+ K P+P PMP P KP P +P K
Sbjct: 223 KHKPKPFPKPMLFPKPMPIP-KPMPFPKPMPKPKPK---PKPMPKPKPKLK 269
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 7 EHFRRPAPPEIKLRRPPPMHHKVNPYPLPMPNPHNSHGMKKPSPSAQP 150
+H +P P + +P P H K P+P PM P KP P ++P
Sbjct: 53 KHKPKPFPKPMLFPKPMPKH-KPKPFPKPMLFP-KPMPFPKPMPKSKP 98
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Frame = +1
Query: 13 FRRPAPPEIKLRRPPPMHHKVNPYPLPM--PNP---HNSHGMKKPSPSAQPNHK 159
F +P P +P P H K P+P PM P P KP P P HK
Sbjct: 173 FPKPMPKPKPKPKPMPKH-KPKPFPKPMLFPKPMPIPKPMPFPKPMPKPMPKHK 225
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +1
Query: 13 FRRPAPPEIKLRRPPPMHHKVNPYPLPM--PNPHNSHGMKKPSPSAQP 150
F +P P +P P H K P+P PM P P H KP P +P
Sbjct: 37 FPKPMPKPKPKPKPMPKH-KPKPFPKPMLFPKPMPKH---KPKPFPKP 80
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +1
Query: 28 PPEIKLRRPPPMHH-KVNPYPLPMPNPHNSHGMKKPSPSAQPNHK 159
P + +P P K P+P PMP P KP P P HK
Sbjct: 148 PKPMPFPKPMPKSKPKSEPFPNPMPFP-KPMPKPKPKPKPMPKHK 191
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 22 PAPPEIKLRRPPPM-HHKVNPYPLPMPNPHNSHGMKKPSPSAQP 150
P P + +P PM HK P+P PM P + KP P +P
Sbjct: 102 PFPNPMPFPKPKPMPKHKPKPFPKPMLFP-KPMPIPKPMPFPKP 144
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = +1
Query: 13 FRRPAP-PEIKLRRPPPMHHKVNPYPLPMPNPHNSHGMKKPSPSAQP 150
F +P P P+ + P NP P P P P H KP P +P
Sbjct: 83 FPKPMPFPKPMPKSKPKSEPFPNPMPFPKPKPMPKH---KPKPFPKP 126
>U23139-1|AAK31493.2| 513|Caenorhabditis elegans Hypothetical
protein F13H8.5 protein.
Length = 513
Score = 31.9 bits (69), Expect = 0.43
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 7 EHFRRPAPPEIKLRRPPPMHHKVNPYPLPMPNPHNSHGMKKPSPSAQP 150
+ RPAP + RRP P + P P P SH ++P+P P
Sbjct: 340 QQLTRPAPARPQTRRPVPQPQQAT-RPAPRPVAPKSHLAQQPAPVTAP 386
>Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical
protein F25H8.5c protein.
Length = 732
Score = 31.1 bits (67), Expect = 0.76
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = +1
Query: 22 PAPP--EIKLRRPPPMHHKVNPYPLPMPNPHNSHGMKKPSPSAQPNHKQ 162
P PP + + +PPP P P P P P + G PSP N Q
Sbjct: 107 PPPPCQQYQQPQPPPCQRPQPPQPQPQPYPQRTGGC-LPSPRGYENQPQ 154
>Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical
protein F25H8.5b protein.
Length = 369
Score = 31.1 bits (67), Expect = 0.76
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = +1
Query: 22 PAPP--EIKLRRPPPMHHKVNPYPLPMPNPHNSHGMKKPSPSAQPNHKQ 162
P PP + + +PPP P P P P P + G PSP N Q
Sbjct: 107 PPPPCQQYQQPQPPPCQRPQPPQPQPQPYPQRTGGC-LPSPRGYENQPQ 154
>Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical
protein F25H8.5a protein.
Length = 780
Score = 31.1 bits (67), Expect = 0.76
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = +1
Query: 22 PAPP--EIKLRRPPPMHHKVNPYPLPMPNPHNSHGMKKPSPSAQPNHKQ 162
P PP + + +PPP P P P P P + G PSP N Q
Sbjct: 107 PPPPCQQYQQPQPPPCQRPQPPQPQPQPYPQRTGGC-LPSPRGYENQPQ 154
>Z72511-3|CAA96657.1| 610|Caenorhabditis elegans Hypothetical
protein F55A11.3 protein.
Length = 610
Score = 30.7 bits (66), Expect = 1.00
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +1
Query: 1 RHEHFRRPAPPEIKLRRPPPMHHKVNPYPLPMPNPHNSHGMKKPSPSAQPNHKQ 162
R E PP + + PP M + P PLP N + G +P P++ Q
Sbjct: 420 RPEFMNLIPPPPLPMAGPPGMFPMMPPPPLPQVN--TTQGTSSETPPVNPSYSQ 471
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/53 (37%), Positives = 23/53 (43%)
Frame = +1
Query: 4 HEHFRRPAPPEIKLRRPPPMHHKVNPYPLPMPNPHNSHGMKKPSPSAQPNHKQ 162
H+ F PAP RP M+ + P PLPM P M P P Q N Q
Sbjct: 409 HQIFYAPAPAN----RPEFMN-LIPPPPLPMAGPPGMFPMMPPPPLPQVNTTQ 456
>AL117204-14|CAB55155.1| 264|Caenorhabditis elegans Hypothetical
protein Y116A8C.23 protein.
Length = 264
Score = 30.7 bits (66), Expect = 1.00
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 34 EIKLRRPPPMHHKVNPYPLPMPNPHNSHGMKKP 132
E R PPP H PYP+P P + + +P
Sbjct: 177 EYARRPPPPFHPAFYPYPMPRETPIGATNIDEP 209
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 22 PAPPEIKLRRPPPMHHKVNPYPLPMPNPHNSHGMKKPS--PSAQPNHKQ 162
P PP PPPM P P PMP P M++PS PS P + Q
Sbjct: 66 PPPPICPPPPPPPM--PCPPPPPPMPRPSCPCMMQRPSFYPSYVPQYYQ 112
>AF067209-1|AAC16982.2| 553|Caenorhabditis elegans Warthog
(hedgehog-like family)protein 9 protein.
Length = 553
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +1
Query: 13 FRRPAPPEIKLRRPPPMHHKVNPYPLPMPNPHNSHGMKKPSPSAQP 150
F+ PAPP PPP P P+P + G +P P QP
Sbjct: 373 FQFPAPPA-----PPPFGVPQAPQLAPLPQHQHQFGFFQPPPQPQP 413
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/43 (39%), Positives = 17/43 (39%)
Frame = +1
Query: 22 PAPPEIKLRRPPPMHHKVNPYPLPMPNPHNSHGMKKPSPSAQP 150
P PP PPPM P P P P S GM P P P
Sbjct: 264 PPPPPSVTPMPPPM--PPTPGMTPRPPPPPSSGMWPPPPPPPP 304
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/43 (39%), Positives = 17/43 (39%)
Frame = +1
Query: 22 PAPPEIKLRRPPPMHHKVNPYPLPMPNPHNSHGMKKPSPSAQP 150
P PP PPPM P P P P S GM P P P
Sbjct: 274 PPPPPSVTPMPPPM--PPTPGMTPRPPPPPSSGMWPPPPPPPP 314
>U50197-7|AAM54189.1| 796|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform c protein.
Length = 796
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +1
Query: 49 RPPPMHHKVNPYPLPMPNPHNSHGMKKPSPSAQPNH 156
RPPPM+ P P+P P P P P++
Sbjct: 290 RPPPMNMHTRPQPMPQQLPSVGATFAHPLPHQAPHN 325
>U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform a protein.
Length = 892
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +1
Query: 49 RPPPMHHKVNPYPLPMPNPHNSHGMKKPSPSAQPNH 156
RPPPM+ P P+P P P P P++
Sbjct: 386 RPPPMNMHTRPQPMPQQLPSVGATFAHPLPHQAPHN 421
>U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform b protein.
Length = 864
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +1
Query: 49 RPPPMHHKVNPYPLPMPNPHNSHGMKKPSPSAQPNH 156
RPPPM+ P P+P P P P P++
Sbjct: 358 RPPPMNMHTRPQPMPQQLPSVGATFAHPLPHQAPHN 393
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +1
Query: 22 PAPPEIKLRRPPPMHHKVNPYPLPMPNPHNSHGMKKPSPSAQ 147
PAPP P P P P P P P+ H + P+P Q
Sbjct: 95 PAPP------PAPYPQHAVPAPAPPPAPYPQHAVPAPAPYQQ 130
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Frame = +1
Query: 16 RRPAPPEIKLRRPPPMHHKVNPYPLPMPNPHNS---HGMKKP------SPSAQPNHKQ 162
++P PP PPP H YP P P PH++ H +P +P QP + Q
Sbjct: 130 QQPPPPPPPPHYPPPPPH----YPPPPPAPHSAYIDHSAPRPAYIEHSAPPPQPQYPQ 183
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +1
Query: 10 HFRRPAPPEIKLRRPPPMHH--KVNPYPLPMPNPHNSHGMKKPSP 138
+ + A P+ PPP + + P P P P P+ H + P+P
Sbjct: 38 YVEQSAQPQQTAPPPPPAPYPQQAVPAPAPPPAPYPQHAVPAPAP 82
>AF005205-1|AAB61748.1| 796|Caenorhabditis elegans DAF-3 protein.
Length = 796
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +1
Query: 49 RPPPMHHKVNPYPLPMPNPHNSHGMKKPSPSAQPNH 156
RPPPM+ P P+P P P P P++
Sbjct: 290 RPPPMNMHTRPQPMPQQLPSVGATFAHPLPHQAPHN 325
>AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signaling
pathway homologprotein 1 protein.
Length = 1451
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +1
Query: 547 NDSNQTTRHKDTXNTTAQFFQTSNPRVKLENELLSQNGYEASD 675
+ S T ++D +TT++ S+ V EN+++S+NG E+ D
Sbjct: 727 SSSTGNTNNEDANSTTSESSDGSDDEV--ENDMISENGGESGD 767
>AC024817-53|AAP13744.1| 549|Caenorhabditis elegans Hypothetical
protein Y54G2A.26b protein.
Length = 549
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +1
Query: 22 PAPPEIKLRRPPPMHHKVNPYPLPMPNPHNSHGMKKPSPSAQP 150
P PP + PP + NPY P P P H M+ +P P
Sbjct: 16 PGPPVMHQNGPPGVVPTSNPYYQP-PVPPQHHHMQPQAPMMSP 57
>AC024817-52|AAF59568.4| 611|Caenorhabditis elegans Hypothetical
protein Y54G2A.26a protein.
Length = 611
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +1
Query: 22 PAPPEIKLRRPPPMHHKVNPYPLPMPNPHNSHGMKKPSPSAQP 150
P PP + PP + NPY P P P H M+ +P P
Sbjct: 78 PGPPVMHQNGPPGVVPTSNPYYQP-PVPPQHHHMQPQAPMMSP 119
>Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical
protein F38E11.5 protein.
Length = 1000
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 22 PAPPEIKLRRPPPMHHKVNPYPLPMPNPHNSHGMKKPSPSAQPNHKQ 162
P E +L+ PPP P P+ P+P +++PSP +P ++
Sbjct: 863 PRQTETQLKAPPPPSVARQPSPVRQPSP-----IREPSPIREPEPEE 904
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = +1
Query: 25 APPEIKLR-RPPPMHHKVNPYPLPMPNPHNSHGMKKPSPSAQP 150
APP IK P + P P P P + PSPS QP
Sbjct: 447 APPTIKFPISTGPSYSSTTPPTTPKPAPPPPSRIPNPSPSPQP 489
>AF164625-1|AAD47816.1| 944|Caenorhabditis elegans
tandem-array-modifier protein protein.
Length = 944
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +1
Query: 28 PPEIKLRRPPPMHHKVNPYPLPMPNPHNS-HGMKKPSPSAQPNHKQ 162
P + + PPPMHH++ P M H H M + Q H++
Sbjct: 453 PGQYIMGHPPPMHHQMQQGPPRMMYMHQQHHPMHQVEDQMQRQHQR 498
>AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array
expression modifierprotein 1 protein.
Length = 944
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +1
Query: 28 PPEIKLRRPPPMHHKVNPYPLPMPNPHNS-HGMKKPSPSAQPNHKQ 162
P + + PPPMHH++ P M H H M + Q H++
Sbjct: 453 PGQYIMGHPPPMHHQMQQGPPRMMYMHQQHHPMHQVEDQMQRQHQR 498
>AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacting
protein protein 6 protein.
Length = 1106
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 31 PEIKLRRPPPMHHK-VNPYPLPMPNPHNSHGMKKPSPSAQPN 153
P+ KL P P K V+ + +P+ P+ K +PS+QPN
Sbjct: 680 PKEKLNAPAPSIPKSVSAFGVPLKPPNAESERPKVAPSSQPN 721
>U00066-9|AAA50743.3| 780|Caenorhabditis elegans Mediator protein
15, isoform a protein.
Length = 780
Score = 26.2 bits (55), Expect(2) = 4.5
Identities = 7/23 (30%), Positives = 14/23 (60%)
Frame = +1
Query: 4 HEHFRRPAPPEIKLRRPPPMHHK 72
H+ + P PP +++ +PP H +
Sbjct: 479 HQQYMGPPPPHMQMHQPPMWHQQ 501
Score = 20.6 bits (41), Expect(2) = 4.5
Identities = 9/28 (32%), Positives = 12/28 (42%)
Frame = +1
Query: 55 PPMHHKVNPYPLPMPNPHNSHGMKKPSP 138
P +H+ PYP P +N P P
Sbjct: 540 PVNNHRHAPYPNPAAMRNNMRMPNGPGP 567
>U00066-8|AAM54164.1| 777|Caenorhabditis elegans Mediator protein
15, isoform b protein.
Length = 777
Score = 26.2 bits (55), Expect(2) = 4.5
Identities = 7/23 (30%), Positives = 14/23 (60%)
Frame = +1
Query: 4 HEHFRRPAPPEIKLRRPPPMHHK 72
H+ + P PP +++ +PP H +
Sbjct: 476 HQQYMGPPPPHMQMHQPPMWHQQ 498
Score = 20.6 bits (41), Expect(2) = 4.5
Identities = 9/28 (32%), Positives = 12/28 (42%)
Frame = +1
Query: 55 PPMHHKVNPYPLPMPNPHNSHGMKKPSP 138
P +H+ PYP P +N P P
Sbjct: 537 PVNNHRHAPYPNPAAMRNNMRMPNGPGP 564
>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
assigned gene nameprotein 77 protein.
Length = 1004
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 16 RRPAPPEIKLRRPPPMHHKVNPYPLPMPNPHNSHGMKKPSPS 141
++P PP R PPP H+ P L P P + + ++ PS S
Sbjct: 18 KQPPPPPSPRRAPPPPPHR-KPASL-SPPPDDENTIRPPSSS 57
>AL008867-2|CAE17750.1| 763|Caenorhabditis elegans Hypothetical
protein C46E1.3 protein.
Length = 763
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 31 PEIKLRRPPPMHHK--VNPYPLPMPNPHNSHGMK 126
P I + P P++ NP+ +P P P ++H ++
Sbjct: 27 PNITITHPTPIYQPDTPNPFTVPPPTPRDTHSLR 60
>AF063007-6|AAC16427.2| 523|Caenorhabditis elegans Taf
(tbp-associated transcriptionfactor) family protein 4
protein.
Length = 523
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 22 PAPPEIKLRRPPPMHHKVNPYPLPMPNPHNSHGMKKPSPSAQ 147
PAPP+IK H++ P P+ P N H M+ P Q
Sbjct: 27 PAPPQIKQEVDYQDAHQMAPEPVEAPQAQN-HQMQPPRQPIQ 67
>Z73898-9|CAA98066.2| 913|Caenorhabditis elegans Hypothetical
protein ZK822.1 protein.
Length = 913
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +3
Query: 288 DPNPTQQTPLSTITANNKHGPNNMHLPVQTLSVGQSDIIVNQVVKSQITLPGSNDAIAQH 467
+P P +T +TI A+ + NN+H P T + II + I G+ I
Sbjct: 719 EPPPASRTTTTTIVASTQDISNNVHSPHGTPVFTRRIIIPVKGNAYDIVPEGTTANIVPA 778
Query: 468 SIPQ 479
+IPQ
Sbjct: 779 NIPQ 782
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Frame = +1
Query: 4 HEHFRRPAPPEIKLRR-----PPPMHHKVNPYPLPMPNPHNSHGMKKPSPSAQP 150
HE P PP K R PPP +V P P P M PSP +P
Sbjct: 118 HEASPPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRP 171
>AL032630-1|CAA21558.1| 366|Caenorhabditis elegans Hypothetical
protein Y62H9A.1 protein.
Length = 366
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 264 IHQHLLKNDPNPTQQTPLSTITANNKHGPNN 356
+H+++ +N P QT LST T++ P N
Sbjct: 326 LHKYVPRNQPKAVTQTQLSTFTSHVPSRPTN 356
>AF043698-2|AAB97559.3| 700|Caenorhabditis elegans Hypothetical
protein C54G6.2 protein.
Length = 700
Score = 27.9 bits (59), Expect = 7.0
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +3
Query: 327 TANNKHGPNNMHLPVQTLSVGQSDIIVNQVVK--SQITLPGSNDAIAQHSIPQPYH 488
T ++HG +N H V+ LS I+ Q+++ S I+LP + I +H I PYH
Sbjct: 397 TVKHRHGNSNHH-GVRPLSH-----IIPQILEKASSISLPFLCNEIRRHLIKDPYH 446
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 9/53 (16%)
Frame = +1
Query: 19 RPAPPEIKLRRPPP------MHHKVN---PYPLPMPNPHNSHGMKKPSPSAQP 150
RPAPP + PPP + N P P P P P N G P P P
Sbjct: 532 RPAPPPVSSIPPPPPIAGLLAANGTNVPIPPPPPPPLPQNLSGAPPPPPPPPP 584
>U53338-7|AAA96195.2| 342|Caenorhabditis elegans Lunapark (membrane
protein) homologprotein 1 protein.
Length = 342
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +1
Query: 31 PEIKLRRPP--PMHHKVNPYPLPMPNPHNSHGMKKPSPSAQPNHKQ 162
P+I L RPP P + N P N HN +KPS P+ Q
Sbjct: 272 PQIPLTRPPMGPKGIQHNGRVGPSENTHNMMENQKPSTDLTPSASQ 317
>U10402-7|AAA19069.1| 192|Caenorhabditis elegans C. elegans neuro d
homolog protein1 protein.
Length = 192
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 58 PMHHKVNPYPLPMPNPHNSHGMKKPSPSAQP 150
P HH+++P P PH+S PS S P
Sbjct: 125 PSHHQLHP---SHPPPHSSFSSSSPSSSCSP 152
>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
homolog protein 1 protein.
Length = 1493
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 22 PAPPEIKLRRPPPMHHKVNPYPLPMPNPHNSHGMKKPSPSAQ 147
P PP + PPP V P P+P N H P+ S++
Sbjct: 1426 PLPPAL----PPPRGSSVFRAPPPLPPKSNRHNSNSPTLSSE 1463
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,061,923
Number of Sequences: 27780
Number of extensions: 328502
Number of successful extensions: 1239
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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