Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0892
         (673 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6DLJ6 Cluster: Putative uncharacterized protein; n=1; ...    36   0.67 
UniRef50_Q27171 Cluster: Dynein heavy chain, cytosolic; n=6; Euk...    35   2.1  
UniRef50_Q05FK9 Cluster: Putative GTPase; n=1; Candidatus Carson...    34   3.6  
UniRef50_P21421 Cluster: DNA-directed RNA polymerase subunit bet...    33   4.8  
UniRef50_Q53588 Cluster: Glycosyl-4,4'-diaponeurosporenoate acyl...    33   4.8  
UniRef50_Q0STH7 Cluster: Oxacillin resistance-related FmtC prote...    33   6.3  
UniRef50_Q9MTD9 Cluster: Ribosomal protein S5; n=1; Toxoplasma g...    33   8.3  

>UniRef50_A6DLJ6 Cluster: Putative uncharacterized protein; n=1;
            Lentisphaera araneosa HTCC2155|Rep: Putative
            uncharacterized protein - Lentisphaera araneosa HTCC2155
          Length = 2320

 Score = 36.3 bits (80), Expect = 0.67
 Identities = 22/74 (29%), Positives = 37/74 (50%)
 Frame = -1

Query: 472  NAV*QCNKIDNKDYNTSIPQSKDHYVSQNALAHTIKSKNYKIAYQ*VWKKLNIRKFKLNT 293
            NAV   +  DN+  + ++P+  ++Y++ NA   TI S N ++A    W   N+ + K  T
Sbjct: 1090 NAVEHTHGPDNQLISKTLPKVDNYYINSNA---TITSNNSQLAGILTWDYDNMNRLKSTT 1146

Query: 292  KLEANIKYVSFN*F 251
             L  N     +N F
Sbjct: 1147 DLNGNTTQFEYNAF 1160


>UniRef50_Q27171 Cluster: Dynein heavy chain, cytosolic; n=6;
           Eukaryota|Rep: Dynein heavy chain, cytosolic -
           Paramecium tetraurelia
          Length = 4540

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 5/122 (4%)
 Frame = +3

Query: 18  KPQVSLC*MKNLTFHKKGSLFCYFISRVSVKLSIQNFNDCT*NYFSIKMMVILSIIIKLQ 197
           +P+V    ++ LT  KK ++   F   +++K S+Q    C  N F +K   I +++I   
Sbjct: 284 QPEVDFT-IEVLTQAKKMNITAQF-KEIALKQSLQKCQSC--NQF-MKEFPINNLLIATN 338

Query: 198 LIELKD**VVQYYFMLFKNQLNETYFI-----LASNFVFNLNFLMLSFFHTY*YAIL*FL 362
           L+E+KD  +  +  M   + + ETY I     LA +F   L   M+ +F  +    + ++
Sbjct: 339 LVEIKDAMIQIFQHMKKLSNIQETYTIPRSLQLAESFSRELTNEMIKYFKGFQILHIKYV 398

Query: 363 DF 368
           DF
Sbjct: 399 DF 400


>UniRef50_Q05FK9 Cluster: Putative GTPase; n=1; Candidatus
           Carsonella ruddii PV|Rep: Putative GTPase - Carsonella
           ruddii (strain PV)
          Length = 254

 Score = 33.9 bits (74), Expect = 3.6
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +3

Query: 81  CYFISRVSVKLSIQNFNDCT*NYFSIKMMV-ILSIIIKLQLIELKD**VVQYYFMLFKNQ 257
           C F+ +  +K  + N N    + F I  +  I  III L +I +    +  Y++ L+   
Sbjct: 139 CLFVYKFFIKSFVLNINSNNLDVFKINFISKIYLIIINLNIIHILIKIIKFYFYFLYLKN 198

Query: 258 LNETYFILASNFVFNLNFLML 320
               Y+ +  N   N+ FL L
Sbjct: 199 FKNNYYWIILNINKNIFFLKL 219


>UniRef50_P21421 Cluster: DNA-directed RNA polymerase subunit beta;
           n=5; Plasmodium|Rep: DNA-directed RNA polymerase subunit
           beta - Plasmodium falciparum
          Length = 1024

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 29/97 (29%), Positives = 45/97 (46%)
 Frame = -2

Query: 660 WNFXIPHNIFNK*IRSSRFQNFPVSNNCFVHKLTTFFKYE**SHK*LLSKIFGIINIQFR 481
           +NF +  NIFNK   +  F N  +  N   +K TT       + K + +    II I F 
Sbjct: 411 YNFKLLLNIFNKNFYNISFNNIYLKKNINFNK-TTILTINKNTFK-ICNITQNIIYIPFN 468

Query: 480 YI*MLYDNVIKLTIKTTIHPYHNQKIIMSVKMHLHIL 370
           Y+    +N+I       IH   + + +MS+KMH  I+
Sbjct: 469 YLLSFIENLIPF-----IHYNDSIRNLMSIKMHTQIV 500


>UniRef50_Q53588 Cluster: Glycosyl-4,4'-diaponeurosporenoate
           acyltransferase precursor; n=14; Staphylococcus
           aureus|Rep: Glycosyl-4,4'-diaponeurosporenoate
           acyltransferase precursor - Staphylococcus aureus
          Length = 165

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +1

Query: 433 SLYCQFYYIVIQHLNISELNINNA-KYFR*QLFV*SLFIFKKCG*FMNK 576
           + +C  Y++++Q LNI+ L      KYFR +  +   F F+K G F NK
Sbjct: 11  AFFCSMYWLIVQ-LNIANLGTRIPDKYFRQKYIIFKSFKFEKHGKFWNK 58


>UniRef50_Q0STH7 Cluster: Oxacillin resistance-related FmtC protein;
           n=6; Clostridium perfringens|Rep: Oxacillin
           resistance-related FmtC protein - Clostridium
           perfringens (strain SM101 / Type A)
          Length = 851

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 22/74 (29%), Positives = 37/74 (50%)
 Frame = +3

Query: 153 SIKMMVILSIIIKLQLIELKD**VVQYYFMLFKNQLNETYFILASNFVFNLNFLMLSFFH 332
           +IK+   L +  K+  + L    +V+ +  +FKN  N  YF +  N +  LN L+++   
Sbjct: 4   NIKISDKLKLFFKIAFVSLVILFIVREFTSVFKN-FNSEYFFMYRNKLDFLNLLIIAALG 62

Query: 333 TY*YAIL*FLDFIV 374
              Y  L F DFI+
Sbjct: 63  VISYIPLSFYDFIL 76


>UniRef50_Q9MTD9 Cluster: Ribosomal protein S5; n=1; Toxoplasma
           gondii|Rep: Ribosomal protein S5 - Toxoplasma gondii
          Length = 268

 Score = 32.7 bits (71), Expect = 8.3
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
 Frame = +3

Query: 117 IQNFNDCT*NYFSIKMMVILSIIIK------LQLIELKD**VVQYYFMLFKNQLNETYFI 278
           I NFN  +  YF     +I + +IK        L  LKD    +Y+F  FKN+   TY+ 
Sbjct: 10  ILNFNKFSKQYFKYNKNIIFNNLIKQLYNFLFYLYILKDFIFYKYFF--FKNK---TYWY 64

Query: 279 LASNFVF--NLNFLML 320
           L + F+F  NLNFL L
Sbjct: 65  LINIFLFLLNLNFLKL 80


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 511,713,180
Number of Sequences: 1657284
Number of extensions: 8716536
Number of successful extensions: 18828
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18802
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)