Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0892
         (673 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    29   0.035
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    26   0.32 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    25   0.56 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   1.3  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    24   1.3  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    24   1.3  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    23   1.7  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   9.2  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 29.1 bits (62), Expect = 0.035
 Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +2

Query: 272 LYIGFQFCV*FKFSYVKFLPYLLICY--FVVFRFYSMCKCILTDIMIF*LWYGCIVVFIV 445
           +++ F  C+ +   ++ FLP +   Y  F++F  + +  C+L  ++    +Y   ++F V
Sbjct: 191 MHLLFLLCLDYFTLHLLFLPCIYYFYSAFIIFTIHLLFYCVLIILLCIYYFYYAFILFTV 250

Query: 446 NFI 454
           + +
Sbjct: 251 HLL 253


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 577 TIIGNRKVLKSAASYLFIKNIMWYXKIPXF 666
           T+I    + +SAA  LF+ N+ W   IP F
Sbjct: 192 TMINPSAICESAAQLLFM-NVQWVRSIPAF 220


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 577 TIIGNRKVLKSAASYLFIKNIMWYXKIPXF 666
           T+I    + +SAA  +F+ N+ W   IP F
Sbjct: 192 TMINPSAICESAAQLIFM-NVQWVRSIPAF 220


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 222 VVQYYFMLFKNQLNETYFILASNFVFNLNFLMLSFF 329
           V++  F L  N LN+   +    F F+   L  SF+
Sbjct: 149 VLRNDFRLMSNNLNKNNVVATGRFTFHKKNLYYSFY 184


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +3

Query: 54  TFHKKGSLFCYFISRVSVKLSIQNFNDCT*NYFSIKMMVILSIIIKLQLIELKD**VVQY 233
           +F KK  ++C     ++    I+   DC   Y S  +  I +I+ +   + L     + Y
Sbjct: 31  SFPKKKLVYCIIFGAIATLTCIEGLRDCPRKY-STPLAKITTILQRYCSVLLV---FLTY 86

Query: 234 YF-MLFKNQLNETYFILA 284
           +F +LF+ +L     IL+
Sbjct: 87  FFNILFRKKLLNAVKILS 104


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +3

Query: 54  TFHKKGSLFCYFISRVSVKLSIQNFNDCT*NYFSIKMMVILSIIIKLQLIELKD**VVQY 233
           +F KK  ++C     ++    I+   DC   Y S  +  I +I+ +   + L     + Y
Sbjct: 27  SFPKKKLVYCIIFGAIATLTCIEGLRDCPRKY-STPLAKITTILQRYCSVLLV---FLTY 82

Query: 234 YF-MLFKNQLNETYFILA 284
           +F +LF+ +L     IL+
Sbjct: 83  FFNILFRKKLLNAVKILS 100


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +1

Query: 397 HNDLLIVVWMYCSLYCQFYYIVI 465
           H  ++++ +   SLYC  YY+++
Sbjct: 62  HIKIVLMFFKEASLYCFNYYVIV 84


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 427 TSIPQSKDHYVSQNAL 380
           +S P+S +HY +Q  L
Sbjct: 101 SSTPESPEHYYNQKTL 116


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,070
Number of Sequences: 336
Number of extensions: 2915
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)