Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0892
         (673 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070936-1|AAL48558.1|  497|Drosophila melanogaster RE03440p pro...    31   1.1  
AF128112-1|AAD28257.1|  497|Drosophila melanogaster putative tra...    31   1.1  
AE014296-3118|AAO41223.1|  497|Drosophila melanogaster CG9655-PC...    31   1.1  
AE014296-3117|AAN11657.1|  497|Drosophila melanogaster CG9655-PB...    31   1.1  
AE014296-3116|AAF49181.1|  497|Drosophila melanogaster CG9655-PA...    31   1.1  

>AY070936-1|AAL48558.1|  497|Drosophila melanogaster RE03440p
           protein.
          Length = 497

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 13/38 (34%), Positives = 26/38 (68%)
 Frame = +3

Query: 222 VVQYYFMLFKNQLNETYFILASNFVFNLNFLMLSFFHT 335
           ++  YF++   +  +T   LA NFVF++++L+L +F+T
Sbjct: 84  ILTTYFLVLLLR-KKTQIFLAINFVFHMSYLLLGYFYT 120


>AF128112-1|AAD28257.1|  497|Drosophila melanogaster putative
           transmembrane proteinnessy protein.
          Length = 497

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 13/38 (34%), Positives = 26/38 (68%)
 Frame = +3

Query: 222 VVQYYFMLFKNQLNETYFILASNFVFNLNFLMLSFFHT 335
           ++  YF++   +  +T   LA NFVF++++L+L +F+T
Sbjct: 84  ILTTYFLVLLLR-KKTQIFLAINFVFHMSYLLLGYFYT 120


>AE014296-3118|AAO41223.1|  497|Drosophila melanogaster CG9655-PC,
           isoform C protein.
          Length = 497

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 13/38 (34%), Positives = 26/38 (68%)
 Frame = +3

Query: 222 VVQYYFMLFKNQLNETYFILASNFVFNLNFLMLSFFHT 335
           ++  YF++   +  +T   LA NFVF++++L+L +F+T
Sbjct: 84  ILTTYFLVLLLR-KKTQIFLAINFVFHMSYLLLGYFYT 120


>AE014296-3117|AAN11657.1|  497|Drosophila melanogaster CG9655-PB,
           isoform B protein.
          Length = 497

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 13/38 (34%), Positives = 26/38 (68%)
 Frame = +3

Query: 222 VVQYYFMLFKNQLNETYFILASNFVFNLNFLMLSFFHT 335
           ++  YF++   +  +T   LA NFVF++++L+L +F+T
Sbjct: 84  ILTTYFLVLLLR-KKTQIFLAINFVFHMSYLLLGYFYT 120


>AE014296-3116|AAF49181.1|  497|Drosophila melanogaster CG9655-PA,
           isoform A protein.
          Length = 497

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 13/38 (34%), Positives = 26/38 (68%)
 Frame = +3

Query: 222 VVQYYFMLFKNQLNETYFILASNFVFNLNFLMLSFFHT 335
           ++  YF++   +  +T   LA NFVF++++L+L +F+T
Sbjct: 84  ILTTYFLVLLLR-KKTQIFLAINFVFHMSYLLLGYFYT 120


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,358,318
Number of Sequences: 53049
Number of extensions: 366418
Number of successful extensions: 686
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2910007350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)