Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0892
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z50177-3|CAA90545.2|  765|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AL117204-6|CAB55149.2|  833|Caenorhabditis elegans Hypothetical ...    27   9.2  
AL031627-13|CAA20964.1|  304|Caenorhabditis elegans Hypothetical...    27   9.2  

>Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical protein
            F35G12.8 protein.
          Length = 1549

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 462  DNVIKLTIKTTIHPYHNQKIIMSVKMHL 379
            + VIKLTI T +H  HNQ++    +M L
Sbjct: 1192 EQVIKLTIATEVHRKHNQELQRIKQMRL 1219


>Z50177-3|CAA90545.2|  765|Caenorhabditis elegans Hypothetical
           protein F46G10.5 protein.
          Length = 765

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 308 FSYVKFLPYL-LICYFVVFRFYSMCKCILTDIMIF*LWYGCIVVFIVNFIT 457
           F+Y+ F   L L   F V  F+S   C  T   I  LW   I+  I++FIT
Sbjct: 187 FNYLGFGVLLSLFVLFGVLFFFSRLFCQFTIFRIVFLWIVAIIAPILSFIT 237


>AL117204-6|CAB55149.2|  833|Caenorhabditis elegans Hypothetical
           protein Y116A8C.13 protein.
          Length = 833

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 311 SYVKFLPYLLICYFVVFRFYSMCKCILTDIMI 406
           S +K +PYL+I Y +  R     K I  D+M+
Sbjct: 310 STIKLMPYLVISYDLAQRHVEKLKIIRFDVMV 341


>AL031627-13|CAA20964.1|  304|Caenorhabditis elegans Hypothetical
           protein Y102A5C.23 protein.
          Length = 304

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 317 VKFLPYLLICYFVVFRFYSMCK--CILTDIMIF*LWYGCIVVFIVNFI 454
           + +L ++L C  V F FYS+    CI+T +    L+   +  F + FI
Sbjct: 73  IYYLIFVLTCISVFFCFYSLFSSLCIITQVFHVLLFVLAVERFFIYFI 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,567,168
Number of Sequences: 27780
Number of extensions: 230145
Number of successful extensions: 477
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)