Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0892
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26910.1 68415.m03228 ABC transporter family protein similar ...    29   2.8  
At3g48185.1 68416.m05256 expressed protein                             29   3.7  

>At2g26910.1 68415.m03228 ABC transporter family protein similar to
            PDR5-like ABC transporter GI:1514643 from [Spirodela
            polyrhiza]
          Length = 1420

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 302  FKFSYVKFLPYLLICYFVV--FRFYSMCKCILT 394
            F++S VKFL YL   YF +  F FY M    +T
Sbjct: 1270 FEWSAVKFLWYLFFMYFSIMYFTFYGMMTTAIT 1302


>At3g48185.1 68416.m05256 expressed protein
          Length = 85

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +2

Query: 257 IK*NILYIGFQFCV*FKFSYVKFLPYLLICYFVVFRFYSMC 379
           IK    Y  F FCV F F Y  +   LL  +F +  F   C
Sbjct: 37  IKCVCFYSFFSFCVSFSFDYPLYFYLLLFFFFRISPFSDRC 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,131,406
Number of Sequences: 28952
Number of extensions: 183864
Number of successful extensions: 263
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)