Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0889
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC922.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   5.7  
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    25   9.9  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    25   9.9  

>SPAC922.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 117

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 10/64 (15%)
 Frame = -3

Query: 404 FNACNAYLHIN---------ILTSYSHETRFCTRYKLYQTKINGXSTLTI-IFKV*ADVW 255
           FN C AY +IN         + T Y + +  CT   ++QT  +G   + +  F+     W
Sbjct: 56  FNKCQAYPNINSINALTDGAVCTVYVYSSNNCTGEPVFQTDSDGIECINVDAFE--TGSW 113

Query: 254 NYNC 243
            + C
Sbjct: 114 KFKC 117


>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 427 YEF*LQLLLIKNYCKVCKTRHHFSDCYKHR 516
           YEF L  L  +N  +V  + H++++ +KH+
Sbjct: 163 YEFLLATLEFQNVSQVANSIHNYANHHKHQ 192


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 75  DSVTCFDNIRVFNQNS*SKQLLKKFKIVIIWLFSFV 182
           DS    +N   FN+ +  K+LL  ++   IW+  F+
Sbjct: 60  DSNNNNENNEAFNEKAAEKKLLPWYRRYFIWILIFI 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,369,294
Number of Sequences: 5004
Number of extensions: 42049
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)