Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0887
         (677 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   3.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.0  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   4.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.3  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   7.0  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   9.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   9.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   9.3  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +3

Query: 441 FNVINGGSHAGNKLAMQEFMIFPQGHPPSVKP 536
           F+ I GG  A  +    +++  P G+ P + P
Sbjct: 88  FSSIGGGISASKRQRTDDWLSSPSGNVPPLTP 119


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = +2

Query: 431 CTSIQCDQWRITCWK 475
           C + +C+  + TCW+
Sbjct: 873 CVTCKCENGKPTCWR 887


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 495 FMIFPQGHPPSVKP 536
           F IFP G PP V P
Sbjct: 193 FGIFPGGAPPLVSP 206


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 8    RSRLVKSLTLVATLLWKL 61
            +SRLVK+L L   ++W L
Sbjct: 2646 KSRLVKALKLGGGMVWAL 2663


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 127 HEHQWMHQRVQLPGTSQALLPD 62
           H+HQ     VQ+P    A+ PD
Sbjct: 25  HQHQHYGAAVQVPQGGGAVQPD 46


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/34 (23%), Positives = 20/34 (58%)
 Frame = +1

Query: 376 FRCTSTWLIWLEIMTLFYLYQHSM*SMEDHMLEI 477
           F CT+  + + +  ++ +L+ +   + +DH +EI
Sbjct: 67  FFCTALVIFYCQEGSVDFLFDNFSAAFQDHNIEI 100


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/34 (23%), Positives = 20/34 (58%)
 Frame = +1

Query: 376 FRCTSTWLIWLEIMTLFYLYQHSM*SMEDHMLEI 477
           F CT+  + + +  ++ +L+ +   + +DH +EI
Sbjct: 300 FFCTALVIFYCQEGSVDFLFDNFSAAFQDHNIEI 333


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/34 (23%), Positives = 20/34 (58%)
 Frame = +1

Query: 376 FRCTSTWLIWLEIMTLFYLYQHSM*SMEDHMLEI 477
           F CT+  + + +  ++ +L+ +   + +DH +EI
Sbjct: 300 FFCTALVIFYCQEGSVDFLFDNFSAAFQDHNIEI 333


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,105
Number of Sequences: 336
Number of extensions: 3675
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)