Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0887
(677 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0117 - 12486672-12486818,12487438-12487488,12487583-124877... 123 2e-28
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429... 114 7e-26
03_02_0365 - 7816966-7817046,7817441-7817492,7817590-7817678,781... 99 3e-21
06_01_0262 - 1930552-1930632,1931096-1931152,1931236-1931287,193... 96 3e-20
03_02_0477 - 8770905-8770985,8771164-8771361,8771939-8772025,877... 95 3e-20
08_02_0041 + 11531010-11531366,11531409-11531657 29 2.6
07_03_0627 - 20061951-20062391,20062912-20062960,20063386-200638... 29 3.4
06_03_0962 + 26351861-26351899,26353304-26353530,26355183-263554... 29 4.5
01_01_0796 + 6190931-6192745 29 4.5
>09_03_0117 -
12486672-12486818,12487438-12487488,12487583-12487729,
12488037-12488354,12488450-12488604,12488941-12489248,
12490644-12491038
Length = 506
Score = 123 bits (296), Expect = 2e-28
Identities = 70/140 (50%), Positives = 83/140 (59%), Gaps = 4/140 (2%)
Frame = +3
Query: 258 EIDELMLKLDGTENKSKLGANAIL*VSLXXXXXXXXXXNVPLYKHLADLAGNNDIVLPVP 437
++D +ML +DGT NKSKLGANAIL VSL VPLYKH+ +LAG ++V+PVP
Sbjct: 136 DVDAIMLDIDGTPNKSKLGANAILGVSLSVCRAGAGAKEVPLYKHIQELAGTKELVMPVP 195
Query: 438 AFNVINGGSHAGNKLAMQEFMIFPQGHPPSVKP*GWVQKCTHHLKKIIKEKVWIGLYGLL 617
AFNVINGGSHAGN LAMQEFM+ P G + + H LK IIK K YG
Sbjct: 196 AFNVINGGSHAGNNLAMQEFMLLPVGASSFSEALRMGSEVYHALKGIIKAK-----YGQD 250
Query: 618 VMXV----GFASQTXQNNQG 665
V GFA N +G
Sbjct: 251 ACNVGDEGGFAPNVQDNREG 270
Score = 102 bits (245), Expect = 2e-22
Identities = 52/73 (71%), Positives = 61/73 (83%), Gaps = 1/73 (1%)
Frame = +1
Query: 10 IKARQIFDSRGNPTVEVDLVTELG-LFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLT 186
I+ARQI DSRGNPTVEVDLV G L R+AVPSGASTG++EALELRD + Y GKGVL
Sbjct: 54 IRARQIVDSRGNPTVEVDLVAGDGRLHRSAVPSGASTGIYEALELRDGDGAAYGGKGVLN 113
Query: 187 AIKNINELIAPEL 225
A++NINE+IAP+L
Sbjct: 114 AVRNINEVIAPKL 126
>10_02_0022 -
4290708-4290788,4291254-4291305,4291396-4291484,
4291565-4291615,4291699-4291893,4292010-4292090,
4292190-4292252,4292480-4292554,4292630-4292710,
4292784-4292888,4292977-4293057,4293156-4293242,
4293322-4293369,4293923-4293987,4294109-4294172,
4294828-4294896
Length = 428
Score = 114 bits (274), Expect = 7e-26
Identities = 72/151 (47%), Positives = 89/151 (58%), Gaps = 11/151 (7%)
Frame = +3
Query: 258 EIDELMLK-LDGTEN-----KSKLGANAIL*VSLXXXXXXXXXXNVPLYKHLADLAGNND 419
E+D M++ LDGT+N K KLGANAIL VSL +PLY+H+A+LAGN
Sbjct: 89 ELDNFMVQQLDGTKNEWGWCKQKLGANAILAVSLAICKAGAIIKKIPLYQHIANLAGNKQ 148
Query: 420 IVLPVPAFNVINGGSHAGNKLAMQ-EFMIFPQGHPPSVKP*GWVQKCTHHLKKIIKEKVW 596
+VLPVPAFNVINGGSHAGNKLAMQ EFMI P G + + H+LK +IK+K
Sbjct: 149 LVLPVPAFNVINGGSHAGNKLAMQAEFMILPTGAASFKEAMKMGVEVYHNLKSVIKKK-- 206
Query: 597 IGLYGLLVMXV----GFASQTXQNNQGCSFI 677
YG V GFA +N +G +
Sbjct: 207 ---YGQDATNVGDEGGFAPNIQENKEGLELL 234
Score = 97.5 bits (232), Expect = 9e-21
Identities = 51/73 (69%), Positives = 58/73 (79%), Gaps = 1/73 (1%)
Frame = +1
Query: 10 IKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRDNIKSEYHGKGVLT 186
+KARQIFDSRGNPTVEVD+ G F RAAVPSGASTGV+EALELRD S+Y GKGV
Sbjct: 8 VKARQIFDSRGNPTVEVDVCCSDGTFARAAVPSGASTGVYEALELRDG-GSDYLGKGVSK 66
Query: 187 AIKNINELIAPEL 225
A+ N+N +IAP L
Sbjct: 67 AVDNVNSVIAPAL 79
>03_02_0365 -
7816966-7817046,7817441-7817492,7817590-7817678,
7817762-7817854,7817900-7818094,7818172-7818249,
7818353-7818415,7818806-7818880,7818958-7819038,
7819329-7819409,7819516-7819602,7819682-7819729,
7820317-7820381,7820566-7820629,7821254-7821322
Length = 406
Score = 99.1 bits (236), Expect = 3e-21
Identities = 51/73 (69%), Positives = 58/73 (79%), Gaps = 1/73 (1%)
Frame = +1
Query: 10 IKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRDNIKSEYHGKGVLT 186
+KARQIFDSRGNPTVEVD+ G F RAAVPSGASTGV+EALELRD S+Y GKGVL
Sbjct: 8 VKARQIFDSRGNPTVEVDICCSDGTFARAAVPSGASTGVYEALELRDG-GSDYLGKGVLK 66
Query: 187 AIKNINELIAPEL 225
A+ N+N +I P L
Sbjct: 67 AVDNVNSIIGPAL 79
Score = 35.9 bits (79), Expect = 0.030
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 8/56 (14%)
Frame = +3
Query: 246 NPTRE--IDELMLK-LDGTEN-----KSKLGANAIL*VSLXXXXXXXXXXNVPLYK 389
+PT + ID M++ LDGT+N K KLGANAIL VSL +PLY+
Sbjct: 83 DPTEQTVIDNFMVQQLDGTKNEWGWCKQKLGANAILAVSLALCKAGAIIKKIPLYQ 138
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +2
Query: 506 PTGASTFSEAMRMGSEVY 559
PTGAS+F EAM+MG EVY
Sbjct: 144 PTGASSFKEAMKMGVEVY 161
>06_01_0262 -
1930552-1930632,1931096-1931152,1931236-1931287,
1931373-1931461,1931551-1931601,1931696-1931890,
1932015-1932095,1932205-1932267,1933045-1933119,
1933194-1933352,1933353-1933463,1933536-1933616,
1933721-1933807,1933920-1933967,1934357-1934421,
1935002-1935065,1935220-1935288
Length = 475
Score = 95.9 bits (228), Expect = 3e-20
Identities = 55/102 (53%), Positives = 69/102 (67%), Gaps = 1/102 (0%)
Frame = +1
Query: 10 IKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRDNIKSEYHGKGVLT 186
+KARQIFDSRGNPTVEVD+ G F R AVPSGASTG++EALELRD S+Y GKGVL
Sbjct: 8 VKARQIFDSRGNPTVEVDVGLSDGSFARGAVPSGASTGIYEALELRDG-GSDYLGKGVLK 66
Query: 187 AIKNINELIAPELTKANLEVTQQERLMNSCLSWMALRTNPNW 312
A+ N+N +I P L + T+Q + N + + T+ NW
Sbjct: 67 AVSNVNTIIGPAL--IGKDPTEQVDIDNFMVQQLD-GTSNNW 105
Score = 91.9 bits (218), Expect = 4e-19
Identities = 52/87 (59%), Positives = 60/87 (68%), Gaps = 9/87 (10%)
Frame = +3
Query: 258 EIDELMLK-LDGTEN-----KSKLGANAIL*VSLXXXXXXXXXXNVPLYK---HLADLAG 410
+ID M++ LDGT N K KLGANAIL VSL +PLY+ H+A+LAG
Sbjct: 89 DIDNFMVQQLDGTSNNWGWCKQKLGANAILAVSLAVCKAGAMVKKIPLYQKLQHIANLAG 148
Query: 411 NNDIVLPVPAFNVINGGSHAGNKLAMQ 491
N +VLPVPAFNVINGGSHAGNKLAMQ
Sbjct: 149 NKTLVLPVPAFNVINGGSHAGNKLAMQ 175
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +2
Query: 506 PTGASTFSEAMRMGSEVY 559
PTGAS+F EAM+MG EVY
Sbjct: 207 PTGASSFKEAMKMGVEVY 224
>03_02_0477 -
8770905-8770985,8771164-8771361,8771939-8772025,
8772094-8772179,8772270-8772368,8772431-8772551,
8773251-8773331,8773643-8773723,8773972-8774088,
8774185-8774256,8774621-8775055
Length = 485
Score = 95.5 bits (227), Expect = 3e-20
Identities = 47/111 (42%), Positives = 66/111 (59%)
Frame = +3
Query: 258 EIDELMLKLDGTENKSKLGANAIL*VSLXXXXXXXXXXNVPLYKHLADLAGNNDIVLPVP 437
+ID+ ++ LD +K+++G N++L VS+ VPLYKH+A+L G + LP+P
Sbjct: 131 QIDQAIMDLDKAHHKAEIGVNSMLAVSIAACKAGAAEKEVPLYKHIAELVGKSATTLPIP 190
Query: 438 AFNVINGGSHAGNKLAMQEFMIFPQGHPPSVKP*GWVQKCTHHLKKIIKEK 590
A VINGG+HAGN L +QE MI P G + + HHLK II EK
Sbjct: 191 AITVINGGTHAGNSLPIQEIMILPVGAKNFEEAMQMGSETYHHLKDIILEK 241
Score = 43.6 bits (98), Expect = 1e-04
Identities = 26/85 (30%), Positives = 44/85 (51%)
Frame = +1
Query: 10 IKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTA 189
++ARQI D RG P VEV L T + RA+ + + A +RD K + + V A
Sbjct: 50 VRARQILDGRGEPAVEVSLHTNKAVHRASAAAADAPEGAAADAVRDAEKRKLLARAVADA 109
Query: 190 IKNINELIAPELTKANLEVTQQERL 264
++ IN+ ++ L ++ QQ ++
Sbjct: 110 VRVINDKVSEAL--VGMDPQQQSQI 132
>08_02_0041 + 11531010-11531366,11531409-11531657
Length = 201
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 479 TCHAGIHDFPTGASTFSEAMRMGSEVYPPFEK 574
+CH HD P +T++E ++MG+ + E+
Sbjct: 7 SCHGENHDEPDAPATWAEVLQMGNNILQVMER 38
>07_03_0627 - 20061951-20062391,20062912-20062960,20063386-20063851,
20063933-20064139,20064267-20064405,20065146-20065282,
20065414-20065657,20065808-20065969,20066049-20066167,
20066240-20066314,20066327-20066500,20066607-20066769,
20067211-20067420,20067515-20067668,20067761-20067839,
20067999-20068146,20068501-20068671,20068771-20069385
Length = 1250
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 79 GLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINELIAPE 222
GL +A + SGA + A+E D+ YHG V +++N +IA +
Sbjct: 1124 GLVKAFMDSGAKAVISSAMEPPDSQSIVYHGMEVNGSLENGKFVIADD 1171
>06_03_0962 +
26351861-26351899,26353304-26353530,26355183-26355421,
26356276-26356495,26358093-26358214,26358428-26358729,
26358776-26358883,26359314-26359376,26359415-26359621,
26359702-26359812,26359899-26360228
Length = 655
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -1
Query: 623 HHQQAVESNPNF-LLNDLFQMVGTLLNPSSWLH*RWMPLWENH 498
HH+ E + NF L LF +G LNP SW + + L +NH
Sbjct: 247 HHR---EKDSNFCLFMPLFDALGGTLNPKSWQLQKEVDLGKNH 286
>01_01_0796 + 6190931-6192745
Length = 604
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +1
Query: 79 GLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEV--TQ 252
GLF+ A TG A+ + D +S++H G T ++ ++ ++ +A E
Sbjct: 29 GLFKCASDLSILTGASVAVVIEDQNRSKFHAVGTPTVQAVVDAALSSDVEEAAAEARPVA 88
Query: 253 QERLM 267
E+LM
Sbjct: 89 DEQLM 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,115,427
Number of Sequences: 37544
Number of extensions: 406569
Number of successful extensions: 888
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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