Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0887
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17335| Best HMM Match : Enolase_C (HMM E-Value=0)                   97   2e-20
SB_29862| Best HMM Match : Enolase_N (HMM E-Value=6e-20)               80   1e-15
SB_28893| Best HMM Match : Enolase_C (HMM E-Value=5.6e-07)             45   7e-05
SB_9773| Best HMM Match : TPR_2 (HMM E-Value=3.2e-06)                  28   6.0  
SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)            28   8.0  

>SB_17335| Best HMM Match : Enolase_C (HMM E-Value=0)
          Length = 284

 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 50/97 (51%), Positives = 64/97 (65%)
 Frame = +3

Query: 375 VPLYKHLADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQEFMIFPQGHPPSVKP*GWVQK 554
           VPLYK++A LAGNN ++LPVPAFNVINGGSHAGNKLAMQEFM+ P G     +      +
Sbjct: 26  VPLYKYIAGLAGNNQVILPVPAFNVINGGSHAGNKLAMQEFMLLPTGASNFREAMRMGAE 85

Query: 555 CTHHLKKIIKEKVWIGLYGLLVMXVGFASQTXQNNQG 665
              +LKK++KEK  I    LL + +  A  T + + G
Sbjct: 86  IYQNLKKVVKEKYGIDGLELLKVAIEKAGYTGKISIG 122


>SB_29862| Best HMM Match : Enolase_N (HMM E-Value=6e-20)
          Length = 115

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 38/67 (56%), Positives = 48/67 (71%)
 Frame = +1

Query: 79  GLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQE 258
           G FRAAVPSGASTG++EALELRD   S++ GKGV  A+ N+N +I P L   N++VT QE
Sbjct: 40  GTFRAAVPSGASTGIYEALELRDKDASKFLGKGVSQAVNNVNTIIGPALVSKNVDVTAQE 99

Query: 259 RLMNSCL 279
            + N  L
Sbjct: 100 DIDNMML 106



 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = +3

Query: 258 EIDELMLKLDGTENK 302
           +ID +ML+LDGTENK
Sbjct: 100 DIDNMMLQLDGTENK 114


>SB_28893| Best HMM Match : Enolase_C (HMM E-Value=5.6e-07)
          Length = 133

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 20/49 (40%), Positives = 30/49 (61%)
 Frame = +3

Query: 444 NVINGGSHAGNKLAMQEFMIFPQGHPPSVKP*GWVQKCTHHLKKIIKEK 590
           N++NGG+HA + + +QEFMI P G     +   W     H LKK++K+K
Sbjct: 2   NILNGGAHADSDVDIQEFMIAPIGAESFKQAYEWGAAVYHSLKKVLKDK 50


>SB_9773| Best HMM Match : TPR_2 (HMM E-Value=3.2e-06)
          Length = 553

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 384 YKHLADLAGNNDIVLPVPAFNVING-GSHAGNKLAMQE 494
           Y HL+ +   +D+ LPV  +N+ +G G   G+ +A+ E
Sbjct: 268 YLHLSRVKDKSDLCLPVTVYNMASGAGFVVGDAIAIPE 305


>SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)
          Length = 870

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 184 TAIKNINELIAPELTKANLEVTQQERLMNSCL 279
           TA KN+ +  A ELT  N + TQ+E+ + + L
Sbjct: 679 TAKKNLEKARAAELTAVNQQATQREQQLTTLL 710


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,429,658
Number of Sequences: 59808
Number of extensions: 449072
Number of successful extensions: 944
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)