Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0887
(677 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68318-8|CAH10783.1| 465|Caenorhabditis elegans Hypothetical pr... 127 6e-30
Z68318-2|CAA92692.1| 434|Caenorhabditis elegans Hypothetical pr... 127 6e-30
Z68318-3|CAD57704.1| 337|Caenorhabditis elegans Hypothetical pr... 119 2e-27
Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical pr... 38 0.007
EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient rec... 38 0.007
Z81557-8|CAD90179.1| 353|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z81540-13|CAB04409.1| 210|Caenorhabditis elegans Hypothetical p... 27 9.3
U80953-2|AAB52556.1| 1107|Caenorhabditis elegans Hypothetical pr... 27 9.3
U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical pr... 27 9.3
AL021491-5|CAA16376.1| 210|Caenorhabditis elegans Hypothetical ... 27 9.3
>Z68318-8|CAH10783.1| 465|Caenorhabditis elegans Hypothetical
protein T21B10.2c protein.
Length = 465
Score = 127 bits (307), Expect = 6e-30
Identities = 71/145 (48%), Positives = 87/145 (60%), Gaps = 4/145 (2%)
Frame = +3
Query: 255 REIDELMLKLDGTENKSKLGANAIL*VSLXXXXXXXXXXNVPLYKHLADLAGNNDIVLPV 434
++ID+ M+ LDG+ENK LGANAIL VSL +PLYK++A+LAG +VLPV
Sbjct: 119 KDIDDFMMALDGSENKGNLGANAILGVSLAVAKAGAVHKGLPLYKYIAELAGTGKVVLPV 178
Query: 435 PAFNVINGGSHAGNKLAMQEFMIFPQGHPPSVKP*GWVQKCTHHLKKIIKEKVWIGLYGL 614
PAFNVINGGSHAGNKLAMQEFMI P G + + HHLK IK++ YGL
Sbjct: 179 PAFNVINGGSHAGNKLAMQEFMILPVGASSFAEAMRMGSEVYHHLKAEIKKR-----YGL 233
Query: 615 LVMXV----GFASQTXQNNQGCSFI 677
V GFA N +G +
Sbjct: 234 DATAVGDEGGFAPNIQDNKEGLDLL 258
Score = 119 bits (286), Expect = 2e-27
Identities = 59/84 (70%), Positives = 67/84 (79%)
Frame = +1
Query: 7 EIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLT 186
+I ARQI+DSRGNPTVEVDL TE G+FRAAVPSGASTGVHEALELRD K+ + GKGVL
Sbjct: 36 KIHARQIYDSRGNPTVEVDLFTEKGVFRAAVPSGASTGVHEALELRDGDKAVHLGKGVLK 95
Query: 187 AIKNINELIAPELTKANLEVTQQE 258
A+ NINE IAP L +VT Q+
Sbjct: 96 AVSNINEKIAPALIAKGFDVTAQK 119
>Z68318-2|CAA92692.1| 434|Caenorhabditis elegans Hypothetical
protein T21B10.2a protein.
Length = 434
Score = 127 bits (307), Expect = 6e-30
Identities = 71/145 (48%), Positives = 87/145 (60%), Gaps = 4/145 (2%)
Frame = +3
Query: 255 REIDELMLKLDGTENKSKLGANAIL*VSLXXXXXXXXXXNVPLYKHLADLAGNNDIVLPV 434
++ID+ M+ LDG+ENK LGANAIL VSL +PLYK++A+LAG +VLPV
Sbjct: 88 KDIDDFMMALDGSENKGNLGANAILGVSLAVAKAGAVHKGLPLYKYIAELAGTGKVVLPV 147
Query: 435 PAFNVINGGSHAGNKLAMQEFMIFPQGHPPSVKP*GWVQKCTHHLKKIIKEKVWIGLYGL 614
PAFNVINGGSHAGNKLAMQEFMI P G + + HHLK IK++ YGL
Sbjct: 148 PAFNVINGGSHAGNKLAMQEFMILPVGASSFAEAMRMGSEVYHHLKAEIKKR-----YGL 202
Query: 615 LVMXV----GFASQTXQNNQGCSFI 677
V GFA N +G +
Sbjct: 203 DATAVGDEGGFAPNIQDNKEGLDLL 227
Score = 119 bits (286), Expect = 2e-27
Identities = 59/84 (70%), Positives = 67/84 (79%)
Frame = +1
Query: 7 EIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLT 186
+I ARQI+DSRGNPTVEVDL TE G+FRAAVPSGASTGVHEALELRD K+ + GKGVL
Sbjct: 5 KIHARQIYDSRGNPTVEVDLFTEKGVFRAAVPSGASTGVHEALELRDGDKAVHLGKGVLK 64
Query: 187 AIKNINELIAPELTKANLEVTQQE 258
A+ NINE IAP L +VT Q+
Sbjct: 65 AVSNINEKIAPALIAKGFDVTAQK 88
>Z68318-3|CAD57704.1| 337|Caenorhabditis elegans Hypothetical
protein T21B10.2b protein.
Length = 337
Score = 119 bits (286), Expect = 2e-27
Identities = 59/84 (70%), Positives = 67/84 (79%)
Frame = +1
Query: 7 EIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLT 186
+I ARQI+DSRGNPTVEVDL TE G+FRAAVPSGASTGVHEALELRD K+ + GKGVL
Sbjct: 5 KIHARQIYDSRGNPTVEVDLFTEKGVFRAAVPSGASTGVHEALELRDGDKAVHLGKGVLK 64
Query: 187 AIKNINELIAPELTKANLEVTQQE 258
A+ NINE IAP L +VT Q+
Sbjct: 65 AVSNINEKIAPALIAKGFDVTAQK 88
Score = 58.8 bits (136), Expect = 3e-09
Identities = 28/56 (50%), Positives = 37/56 (66%)
Frame = +3
Query: 255 REIDELMLKLDGTENKSKLGANAIL*VSLXXXXXXXXXXNVPLYKHLADLAGNNDI 422
++ID+ M+ LDG+ENK LGANAIL VSL +PLYK++A+LAG I
Sbjct: 88 KDIDDFMMALDGSENKGNLGANAILGVSLAVAKAGAVHKGLPLYKYIAELAGTGKI 143
>Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical
protein C29E6.2 protein.
Length = 1193
Score = 37.9 bits (84), Expect = 0.007
Identities = 29/113 (25%), Positives = 60/113 (53%), Gaps = 5/113 (4%)
Frame = +1
Query: 1 RHEIKARQIFDSRGNPTVEVDLVTELGL---FRAAVPSGASTGVHEALELRDNIKSEYHG 171
++ ++I ++ + E+D V + L AA+ S S +H ++L+ ++ +E
Sbjct: 130 KYNTATKKIINALVSENAEIDPVNKYQLTPLHYAAMKSNFSA-LHALIKLKADVDAEDDN 188
Query: 172 K--GVLTAIKNINELIAPELTKANLEVTQQERLMNSCLSWMALRTNPNWVLML 324
K +L A + ++ I EL KAN VT++++ +N+ +ALR P ++ M+
Sbjct: 189 KMTPLLLACVHGSQEIIQELIKANSNVTKRDQRLNTVFHIVALRGEPEYLEMM 241
>EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient
receptor potential subfamilyA-1 protein.
Length = 1206
Score = 37.9 bits (84), Expect = 0.007
Identities = 29/113 (25%), Positives = 60/113 (53%), Gaps = 5/113 (4%)
Frame = +1
Query: 1 RHEIKARQIFDSRGNPTVEVDLVTELGL---FRAAVPSGASTGVHEALELRDNIKSEYHG 171
++ ++I ++ + E+D V + L AA+ S S +H ++L+ ++ +E
Sbjct: 148 KYNTATKKIINALVSENAEIDPVNKYQLTPLHYAAMKSNFSA-LHALIKLKADVDAEDDN 206
Query: 172 K--GVLTAIKNINELIAPELTKANLEVTQQERLMNSCLSWMALRTNPNWVLML 324
K +L A + ++ I EL KAN VT++++ +N+ +ALR P ++ M+
Sbjct: 207 KMTPLLLACVHGSQEIIQELIKANSNVTKRDQRLNTVFHIVALRGEPEYLEMM 259
>Z81557-8|CAD90179.1| 353|Caenorhabditis elegans Hypothetical
protein F59A1.14 protein.
Length = 353
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = -1
Query: 281 LKHEFINLSCWVTSRLAFVSSGAMSSLIFLIAVKTP 174
LK F +SC++ AFV+ + S LIFLI KTP
Sbjct: 2 LKVTFSIISCYLN---AFVAVFSNSILIFLIITKTP 34
>Z81540-13|CAB04409.1| 210|Caenorhabditis elegans Hypothetical
protein F46B3.16 protein.
Length = 210
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = +3
Query: 543 WVQKCTHHLKKIIKEKVWIGLYGLLVMXVGFASQTXQNNQGCSFI 677
W+Q+C ++ ++ + W G G ++ + F + N GC F+
Sbjct: 33 WLQRCPAQIEMLVIDDSWQG-QGPVLYPLDFMDRPQVVNAGCLFL 76
>U80953-2|AAB52556.1| 1107|Caenorhabditis elegans Hypothetical protein
B0412.3 protein.
Length = 1107
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 635 EXHXHHQQAVESNPNFLLNDLFQMVG 558
E H ++AVE + NF LND+F G
Sbjct: 1013 ELKSHSKEAVEISTNFDLNDVFMFSG 1038
>U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical
protein F18G5.4 protein.
Length = 615
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = -1
Query: 623 HHQQAVESNPNFLLNDLFQM--VGTLLNPSSWLH*RWM 516
HH Q FLLN + +M L SWL+ WM
Sbjct: 133 HHSQPTNVTFGFLLNQIVEMDERNQALTTRSWLNINWM 170
>AL021491-5|CAA16376.1| 210|Caenorhabditis elegans Hypothetical
protein F46B3.16 protein.
Length = 210
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = +3
Query: 543 WVQKCTHHLKKIIKEKVWIGLYGLLVMXVGFASQTXQNNQGCSFI 677
W+Q+C ++ ++ + W G G ++ + F + N GC F+
Sbjct: 33 WLQRCPAQIEMLVIDDSWQG-QGPVLYPLDFMDRPQVVNAGCLFL 76
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,983,896
Number of Sequences: 27780
Number of extensions: 346154
Number of successful extensions: 886
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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