Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0887
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.5  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   6.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.2  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 222 TYKSQPRSNPTREIDELMLKLDGTENK 302
           T   QP++NP +  +E  L L    N+
Sbjct: 395 TLSVQPQANPVKGFEEYFLNLTVENNR 421


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 408 QPNQPSACTAE 376
           QPN+PS CT E
Sbjct: 5   QPNRPSYCTWE 15


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 113 DAPEGTAARNKPSSVTRSTSTVGLPRESKI 24
           D P  +A+ N+  + +  TST     E+KI
Sbjct: 271 DRPPASASSNEHEAESEHTSTPNFLSEAKI 300


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = -2

Query: 136 QELHEHQWMHQRVQLPGTSQALLPDQLPQ 50
           Q+LH HQ  H + Q     Q     Q  Q
Sbjct: 812 QQLHHHQSTHPQAQAQAQPQQQQQQQQQQ 840


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,851
Number of Sequences: 438
Number of extensions: 4291
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)