Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0887
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74030.1 68414.m08573 enolase, putative similar to Swiss-Prot...   123   1e-28
At2g36530.1 68415.m04481 enolase identical to SWISS-PROT:P25696 ...   122   2e-28
At2g29560.1 68415.m03590 enolase, putative similar to enolase [S...   109   2e-24
At5g60930.1 68418.m07643 chromosome-associated kinesin, putative...    30   1.6  
At2g15750.1 68415.m01803 hypothetical protein                          29   2.8  
At4g29230.1 68417.m04181 no apical meristem (NAM) family protein...    29   3.7  
At3g55110.1 68416.m06120 ABC transporter family protein ATP-bind...    29   3.7  
At4g17480.1 68417.m02614 palmitoyl protein thioesterase family p...    28   6.5  
At2g36380.1 68415.m04464 ABC transporter family protein related ...    28   6.5  
At1g64050.1 68414.m07255 expressed protein                             28   6.5  
At1g76520.2 68414.m08905 auxin efflux carrier family protein con...    27   8.6  
At1g76520.1 68414.m08904 auxin efflux carrier family protein con...    27   8.6  

>At1g74030.1 68414.m08573 enolase, putative similar to
           Swiss-Prot:P15007 enolase (EC 4.2.1.11)
           (2-phosphoglycerate dehydratase)(2-phospho-D- glycerate
           hydro-lyase) [Drosophila melanogaster]
          Length = 477

 Score =  123 bits (296), Expect = 1e-28
 Identities = 71/140 (50%), Positives = 83/140 (59%), Gaps = 4/140 (2%)
 Frame = +3

Query: 258 EIDELMLKLDGTENKSKLGANAIL*VSLXXXXXXXXXXNVPLYKHLADLAGNNDIVLPVP 437
           ++D LML+LDGT NKSKLGANAIL VSL           VPLYKH+ + +G  ++V+PVP
Sbjct: 134 DVDALMLELDGTPNKSKLGANAILGVSLSVCRAGAGAKGVPLYKHIQETSGTKELVMPVP 193

Query: 438 AFNVINGGSHAGNKLAMQEFMIFPQGHPPSVKP*GWVQKCTHHLKKIIKEKVWIGLYGLL 617
           AFNVINGGSHAGN LAMQEFMI P G     +      +  H LK IIK K     YG  
Sbjct: 194 AFNVINGGSHAGNSLAMQEFMILPVGATSFSEAFQMGSEVYHTLKGIIKTK-----YGQD 248

Query: 618 VMXV----GFASQTXQNNQG 665
              V    GFA     N +G
Sbjct: 249 ACNVGDEGGFAPNVQDNREG 268



 Score =  113 bits (271), Expect = 1e-25
 Identities = 55/72 (76%), Positives = 64/72 (88%)
 Frame = +1

Query: 10  IKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTA 189
           +KARQI DSRGNPTVEVDL+T+  L+R+AVPSGASTG++EALELRD  KS Y GKGVL A
Sbjct: 54  VKARQIIDSRGNPTVEVDLITD-DLYRSAVPSGASTGIYEALELRDGDKSVYGGKGVLQA 112

Query: 190 IKNINELIAPEL 225
           IKNINEL+AP+L
Sbjct: 113 IKNINELVAPKL 124


>At2g36530.1 68415.m04481 enolase identical to SWISS-PROT:P25696
           enolase (EC 4.2.1.11) (2-phosphoglycerate
           dehydratase)(2-phospho-D- glycerate hydro-lyase)
           [Arabidopsis thaliana]
          Length = 444

 Score =  122 bits (295), Expect = 2e-28
 Identities = 77/156 (49%), Positives = 93/156 (59%), Gaps = 12/156 (7%)
 Frame = +3

Query: 246 NPTRE--IDELML-KLDGTEN-----KSKLGANAIL*VSLXXXXXXXXXXNVPLYKHLAD 401
           +PT++  ID  M+ +LDGT+N     K KLGANAIL VSL           +PLYKH+A+
Sbjct: 82  DPTQQTAIDNFMVHELDGTQNEWGWCKQKLGANAILAVSLAVCKAGAVVSGIPLYKHIAN 141

Query: 402 LAGNNDIVLPVPAFNVINGGSHAGNKLAMQEFMIFPQGHPPSVKP*GWVQKCTHHLKKII 581
           LAGN  IVLPVPAFNVINGGSHAGNKLAMQEFMI P G     +      +  HHLK +I
Sbjct: 142 LAGNPKIVLPVPAFNVINGGSHAGNKLAMQEFMILPVGAASFKEAMKMGVEVYHHLKSVI 201

Query: 582 KEKVWIGLYGLLVMXV----GFASQTXQNNQGCSFI 677
           K+K     YG     V    GFA    +N +G   +
Sbjct: 202 KKK-----YGQDATNVGDEGGFAPNIQENKEGLELL 232



 Score = 94.7 bits (225), Expect = 5e-20
 Identities = 52/88 (59%), Positives = 63/88 (71%), Gaps = 1/88 (1%)
 Frame = +1

Query: 10  IKARQIFDSRGNPTVEVDLVTELGL-FRAAVPSGASTGVHEALELRDNIKSEYHGKGVLT 186
           +KARQIFDSRGNPTVEVD+ T  G+   AAVPSGASTG++EALELRD   S+Y GKGV  
Sbjct: 7   VKARQIFDSRGNPTVEVDIHTSNGIKVTAAVPSGASTGIYEALELRDG-GSDYLGKGVSK 65

Query: 187 AIKNINELIAPELTKANLEVTQQERLMN 270
           A+ N+N +I P L     + TQQ  + N
Sbjct: 66  AVGNVNNIIGPAL--IGKDPTQQTAIDN 91


>At2g29560.1 68415.m03590 enolase, putative similar to enolase
           [Spinacia oleracea] gi|8919731|emb|CAB96173
          Length = 475

 Score =  109 bits (261), Expect = 2e-24
 Identities = 55/111 (49%), Positives = 70/111 (63%)
 Frame = +3

Query: 258 EIDELMLKLDGTENKSKLGANAIL*VSLXXXXXXXXXXNVPLYKHLADLAGNNDIVLPVP 437
           +ID+ M+ LD TE KS+LGANAIL VS+           VPL KHL+DL+G  ++VLPVP
Sbjct: 131 QIDQAMIDLDKTEKKSELGANAILAVSIAACKAGAAEKEVPLCKHLSDLSGRANMVLPVP 190

Query: 438 AFNVINGGSHAGNKLAMQEFMIFPQGHPPSVKP*GWVQKCTHHLKKIIKEK 590
           AF V++GG HA N  A+QE MI P G     +   W  +  HHLK +I EK
Sbjct: 191 AFTVLSGGKHASNTFAIQEIMILPIGASRFEEALQWGSETYHHLKAVISEK 241



 Score = 91.1 bits (216), Expect = 6e-19
 Identities = 45/73 (61%), Positives = 54/73 (73%)
 Frame = +1

Query: 7   EIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLT 186
           ++KARQI DSRG PTVEVDL T  G+FRA+VPSG S+G +EA+ELRD  K  Y G  V  
Sbjct: 49  KVKARQILDSRGIPTVEVDLHTNKGVFRASVPSGDSSGTYEAIELRDGDKGMYLGNSVAK 108

Query: 187 AIKNINELIAPEL 225
           A+KNINE I+  L
Sbjct: 109 AVKNINEKISEAL 121


>At5g60930.1 68418.m07643 chromosome-associated kinesin, putative
           microtubule-associated motor KIF4 , Mus musculus,
           PIR:A54803
          Length = 1294

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = -2

Query: 556 HF*THPHGFTEGGCPCGKIMNSCMA----SLFPACDPPLITL-NAGTGRTMSLFPAKSAK 392
           H  T+   +  GG PC +I N C+A    +LF   +  ++     G+G+T ++    S  
Sbjct: 43  HTFTYDFVYGNGGYPCSEIYNHCVAPLVDALFKGYNATVLAYGQTGSGKTYTMGTNYSGD 102

Query: 391 CLYSG 377
           C   G
Sbjct: 103 CTNGG 107


>At2g15750.1 68415.m01803 hypothetical protein 
          Length = 280

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 664 PWLFWXVWEAXPTFITNK 611
           PWLFW +W +    I NK
Sbjct: 116 PWLFWTIWSSRNQLIFNK 133


>At4g29230.1 68417.m04181 no apical meristem (NAM) family protein
           similar to NAM family proteins GP|12751304|,
           GP|6223650|, GP|9758909 - Arabidopsis
           thaliana,PIR2:T04621
          Length = 498

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 629 HXHHQQAVESNPNFLLNDLFQMVGTLLNPSSWLH 528
           H HHQQ  + +  F ++     + T+++PS+ LH
Sbjct: 363 HHHHQQQQQRHHAFNISQPTHPISTIISPSTSLH 396


>At3g55110.1 68416.m06120 ABC transporter family protein ATP-binding
           cassette-sub-family G-member 2, Mus musculus,
           EMBL:AF140218
          Length = 708

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/71 (22%), Positives = 30/71 (42%)
 Frame = +1

Query: 28  FDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINE 207
           F S G P  E + +TE  L       G+S G  + +E  +  +     +    +  ++ E
Sbjct: 308 FSSFGRPIPEKENITEFALDVIRELEGSSEGTRDLVEFNEKWQQNQTARATTQSRVSLKE 367

Query: 208 LIAPELTKANL 240
            IA  +++  L
Sbjct: 368 AIAASVSRGKL 378


>At4g17480.1 68417.m02614 palmitoyl protein thioesterase family
           protein
          Length = 304

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 485 HAGIHDFPTGASTFSEAMRMGSEVYPPFEKDH 580
           HAGI D P   ST  E ++  + VY  F +DH
Sbjct: 131 HAGISDIPKCNSTLCELLK--TAVYTDFVQDH 160


>At2g36380.1 68415.m04464 ABC transporter family protein related to
           multi drug resistance proteins and P-glycoproteins
          Length = 1453

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 485 HAGIHDFPTGASTFSEAMRMGSEVYPPFEK 574
           +  +HDF +G ++F    ++ SE   P++K
Sbjct: 476 YVSVHDFSSGFNSFHAGQQLASEFRVPYDK 505


>At1g64050.1 68414.m07255 expressed protein
          Length = 668

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 122 TPVDAPEGTAARNKPSSVTRSTSTVGLPRESKI 24
           +P+ +PE   +  K   ++RS+S  G PR +K+
Sbjct: 107 SPIASPESAESPRKRGKLSRSSSGNGTPRRTKL 139


>At1g76520.2 68414.m08905 auxin efflux carrier family protein
           contains auxin efflux carrier domain, Pfam:PF03547
          Length = 390

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +1

Query: 10  IKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNI 153
           +K  ++F +   P VE+ L+T +G + A    G +   H+A +  +NI
Sbjct: 2   VKLLELFITSSKPVVEILLITSVGFYMAL--DGVNLLGHDARKYLNNI 47


>At1g76520.1 68414.m08904 auxin efflux carrier family protein
           contains auxin efflux carrier domain, Pfam:PF03547
          Length = 390

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +1

Query: 10  IKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNI 153
           +K  ++F +   P VE+ L+T +G + A    G +   H+A +  +NI
Sbjct: 2   VKLLELFITSSKPVVEILLITSVGFYMAL--DGVNLLGHDARKYLNNI 47


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,300,996
Number of Sequences: 28952
Number of extensions: 324020
Number of successful extensions: 786
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)