Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0886
         (679 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4IXR2 Cluster: Hypothetical membrane protein; n=11; Fr...    35   2.1  
UniRef50_Q8IBW3 Cluster: Putative uncharacterized protein MAL7P1...    35   2.1  
UniRef50_A7R600 Cluster: Chromosome undetermined scaffold_1105, ...    33   4.8  
UniRef50_Q04QF1 Cluster: Putative uncharacterized protein; n=2; ...    33   6.4  

>UniRef50_A4IXR2 Cluster: Hypothetical membrane protein; n=11;
           Francisella tularensis|Rep: Hypothetical membrane
           protein - Francisella tularensis subsp. tularensis
           (strain WY96-3418)
          Length = 239

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 23/63 (36%), Positives = 34/63 (53%)
 Frame = +3

Query: 276 FKSKYYKELVKFRVSLKKNTKAFCIITIFHSDMCKFFVTLNVSFSSASLKLSNISIISQE 455
           F+SKY K++     +L KNT+ F I T   S     FV L++  S +  +LSN+ +I   
Sbjct: 80  FQSKYIKDINSQLANLAKNTEPFYIETNGFSAGKSGFVMLDIKNSQSLQQLSNV-VIKDL 138

Query: 456 RKY 464
            KY
Sbjct: 139 AKY 141


>UniRef50_Q8IBW3 Cluster: Putative uncharacterized protein
           MAL7P1.64; n=5; Plasmodium|Rep: Putative uncharacterized
           protein MAL7P1.64 - Plasmodium falciparum (isolate 3D7)
          Length = 357

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
 Frame = +3

Query: 135 ILCFHNT-CLQ*YLLYTICYVVYLIKLRPMNRVTI-IYVYQ----DPINNF*FFKSKY-- 290
           I+C+++   L  YL+Y +C++ +L  +R  N   I IY  +    D + N+   ++ +  
Sbjct: 132 IICYYSLWILCYYLIYFLCFLSFLYGIRKFNNNVINIYTLRTCKIDKLTNYILSENTFIS 191

Query: 291 -YKELVKFRVSLKKNTKAFCIITIF 362
            Y  ++ F V + K T +F ++  F
Sbjct: 192 LYWAIINFNVFMSKYTDSFYVVNYF 216


>UniRef50_A7R600 Cluster: Chromosome undetermined scaffold_1105,
           whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
           Chromosome undetermined scaffold_1105, whole genome
           shotgun sequence - Vitis vinifera (Grape)
          Length = 319

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
 Frame = +3

Query: 183 ICYVVYLIKLRPMNRVTIIYVYQDPINNF*FFKSKYYKELVKFRVSLKKNTKAFCIITIF 362
           IC  +Y   LRP+ +V  ++++  P  +    + KY   +      LK N+ A   +T +
Sbjct: 150 ICNDLYAPALRPLRQVAKVHIFVQPTVSRVVSRLKYICNM----EGLKTNSTALAALTEY 205

Query: 363 HSDMCKFFVTLN-VSFSSASLKLSNISIIS-------QERKYTNLST-FIFEYVFISH 509
             +MC     LN + F +   +  N+  IS       Q RK   +S  F F Y  IS+
Sbjct: 206 TGEMCDIRSCLNTLQFLNKKNQTLNVFEISSQVKEIFQNRKMNGMSNGFDFLYPLISN 263


>UniRef50_Q04QF1 Cluster: Putative uncharacterized protein; n=2;
           Leptospira borgpetersenii serovar Hardjo-bovis|Rep:
           Putative uncharacterized protein - Leptospira
           borgpetersenii serovar Hardjo-bovis (strain JB197)
          Length = 302

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = +3

Query: 72  NLIESNFHSKNMLDNIIVLVIILCFHNTCLQ*YLLYTICYVVYLIKLRPMNRVTIIYVY 248
           NLIES+F  KN+L   I LV+I     +C+   ++  + Y      L P   V IIY +
Sbjct: 86  NLIESDFKQKNVL-FFIDLVVITYLFLSCISLNMIEMVDYQTSSYNLLPAYHVLIIYSF 143


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 575,033,324
Number of Sequences: 1657284
Number of extensions: 10620158
Number of successful extensions: 22328
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22324
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)