Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0886
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   3.3  
SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    27   3.3  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    26   5.8  
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...    26   5.8  
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...    26   5.8  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   5.8  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   7.6  
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    25   7.6  

>SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 100

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
 Frame = +3

Query: 198 YLIKLRPMNRVTIIYVYQDPINNF*FFKSKYYKELVKFRVSLKKNTKA----FCIITIFH 365
           ++I    MN     Y Y    +NF  F  K     +    + +K         CI T+FH
Sbjct: 15  FIISFMKMNDSYTPYTYIVSFHNFVRFPIKQRNTSIHHAPNKRKRKDEAPFRLCIYTLFH 74

Query: 366 SDMCKFFVTLNVSFSSASLKLSNISI 443
           +  C F   L++S     + +S + I
Sbjct: 75  AHTC-FSCGLSLSLMEVIMDISQLLI 99


>SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 240 ILWLPYSWVSI*LSRRHNKLYKVNIIVGKCCENIK 136
           + WLP S   I  S+    L  VN ++ +CC+N K
Sbjct: 40  VQWLPASHKDILDSKLTVGLNSVNELLERCCQNAK 74


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 228 PYSWVSI*LSRRHNKLYKVNIIVGKCCE 145
           P  W +I  + +++ L+  N+I+G CCE
Sbjct: 269 PEEWSTI--TAKYSNLHNGNLILGGCCE 294


>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 584 PMYAPQHYTLQHSTFENRRLDCRVVMGNEYVFKNK 480
           P    + Y +    FE+ RLD  + +  EY  +NK
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNK 39


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 584 PMYAPQHYTLQHSTFENRRLDCRVVMGNEYVFKNK 480
           P    + Y +    FE+ RLD  + +  EY  +NK
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNK 39


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 21/92 (22%), Positives = 37/92 (40%)
 Frame = +3

Query: 222 NRVTIIYVYQDPINNF*FFKSKYYKELVKFRVSLKKNTKAFCIITIFHSDMCKFFVTLNV 401
           N + +   Y D + N+   +S +YK++  F + L   + A  ++    S   +F+  L  
Sbjct: 239 NDILVQRGYMDALLNYFPIQSTFYKDVKPFDLKLLHMSVASIVLRNDLSLNRRFYAWLMG 298

Query: 402 SFSSASLKLSNISIISQERKYTNLSTFIFEYV 497
                 L +S+ SI   E          FE V
Sbjct: 299 LSKDTELSISDSSITVDENTLQQNMAIFFEGV 330


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 620 NLESYEPVFTIYPMYAPQHYTLQHST 543
           N+  Y P+  + P Y PQ+Y + H T
Sbjct: 406 NMVQYGPI--LQPGYVPQYYPVYHQT 429


>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = +3

Query: 360 FHSDMCKFFVTLNVSFSSASLKLSNISIISQERKYTNLSTFIFEYVF 500
           + + +C     L++  S+ASL+   +S  +  R    +  F F  +F
Sbjct: 125 YRAGICALVTGLDIGLSNASLETITLSFYTMCRSSILIFVFFFSVIF 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,574,050
Number of Sequences: 5004
Number of extensions: 51036
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)