Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0886
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39154| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.57 
SB_734| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.6  
SB_40737| Best HMM Match : Extensin_2 (HMM E-Value=2.2)                29   4.6  
SB_42761| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_23681| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_3312| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  

>SB_39154| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 29.5 bits (63), Expect(2) = 0.57
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 54  IITQRSNLIESNFHSKNMLDNIIVLV 131
           IIT   N+I  N  S NM+DN I+++
Sbjct: 75  IITMIDNIITMNVKSTNMIDNTIIMI 100



 Score = 21.0 bits (42), Expect(2) = 0.57
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 129 VIILCFHNTCL 161
           +IILC H  CL
Sbjct: 129 IIILCVHEYCL 139


>SB_734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +3

Query: 312 RVSLKKNTKAFCIITIFHSDMCKFFVTLNVSFSSASLKLSNISIIS 449
           ++ L    K   I T FH   C F +TLN+    A LK  ++   S
Sbjct: 19  KIDLATRKKILLIPTTFHGATCPFTITLNLLVIRALLKYRSLQSTS 64


>SB_40737| Best HMM Match : Extensin_2 (HMM E-Value=2.2)
          Length = 409

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 168 YLLYTICYVVYLIKLRPMNRVTIIYVYQDPINNF*FFKSKYY 293
           Y++YT  Y +Y+I   P +   I  VY  P + +  + S Y+
Sbjct: 318 YIIYTSPYYIYIIYASPYH---IYIVYSSPYHTYTIYASPYH 356


>SB_42761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +3

Query: 237 IYVYQDPINN-F*FFKSKYYKELVKFRVS-LKKNTKAFCIITIFH 365
           I VY    N  F FFK    +  +K RV+ L KN++AFC + +++
Sbjct: 196 IAVYSGLFNALFTFFKDLMAEHGLKLRVTILIKNSRAFCFVFLYN 240


>SB_23681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 634

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 469 IYRHLFLNTYSFPITTRQSRRRFSNVECCKV*C 567
           IY H F+ T SFP+T  ++   ++  +C K  C
Sbjct: 392 IYHHGFMLTGSFPVTIPRASIHYALFDCVKDEC 424


>SB_3312| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 769

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 469 IYRHLFLNTYSFPITTRQSRRRFSNVECCKV*C 567
           IY H F+ T SFP+T  ++   ++  +C K  C
Sbjct: 527 IYHHGFMLTGSFPVTIPRASIHYALFDCVKDEC 559


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,752,870
Number of Sequences: 59808
Number of extensions: 326197
Number of successful extensions: 496
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)