Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0886
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00043-1|AAC77509.3|  515|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z72514-3|CAA96673.1|  741|Caenorhabditis elegans Hypothetical pr...    28   5.3  

>U00043-1|AAC77509.3|  515|Caenorhabditis elegans Hypothetical
           protein T26A5.6 protein.
          Length = 515

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = -1

Query: 607 TSPSLQFILCMPLNITPYNIRHLRTDVLTAAW*WEMNTYSKINVDKLVYFRSCDIIE 437
           T  S+Q  +C+   I  +     + +V+T A+ +E   +SK++V   +Y   CDI +
Sbjct: 95  TRTSVQKAVCVLSRIPLFGPLKAKLEVITQAY-FEQKDFSKVDVLAQMYTNLCDIFD 150


>Z72514-3|CAA96673.1|  741|Caenorhabditis elegans Hypothetical
           protein T10B10.3 protein.
          Length = 741

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 21/74 (28%), Positives = 31/74 (41%)
 Frame = +3

Query: 309 FRVSLKKNTKAFCIITIFHSDMCKFFVTLNVSFSSASLKLSNISIISQERKYTNLSTFIF 488
           F  S +K  + F +I  FHSD  K    +  +++    K    +  S   K TNLS+  F
Sbjct: 326 FEKSSEKIIECFKVIESFHSDNMKLRYLVMTNYNVYVFKYRTHTQNSSPGKTTNLSSEGF 385

Query: 489 EYVFISHHHAAVKT 530
                   H  +KT
Sbjct: 386 FIPLFRMPHDRIKT 399


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,880,063
Number of Sequences: 27780
Number of extensions: 272321
Number of successful extensions: 595
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)