Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0886
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61160.2 68416.m06845 shaggy-related protein kinase beta / AS...    30   1.6  
At3g61160.1 68416.m06844 shaggy-related protein kinase beta / AS...    30   1.6  
At3g53550.1 68416.m05913 hypothetical protein various predicted ...    29   3.7  
At4g27460.1 68417.m03946 CBS domain-containing protein                 27   8.6  

>At3g61160.2 68416.m06845 shaggy-related protein kinase beta /
           ASK-beta (ASK2) identical to shaggy-related protein
           kinase beta SP:O23145 GI:2569931 from [Arabidopsis
           thaliana]
          Length = 438

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 116 YYSTRNYFMFSQHLPTIIFTLYNL-LCRLLNQI 211
           Y ++R+Y   +QH+P I   LY   +CR +N +
Sbjct: 192 YRASRSYTKMNQHMPLIYIQLYTYQICRAMNYL 224


>At3g61160.1 68416.m06844 shaggy-related protein kinase beta /
           ASK-beta (ASK2) identical to shaggy-related protein
           kinase beta SP:O23145 GI:2569931 from [Arabidopsis
           thaliana]
          Length = 431

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 116 YYSTRNYFMFSQHLPTIIFTLYNL-LCRLLNQI 211
           Y ++R+Y   +QH+P I   LY   +CR +N +
Sbjct: 185 YRASRSYTKMNQHMPLIYIQLYTYQICRAMNYL 217


>At3g53550.1 68416.m05913 hypothetical protein various predicted
           proteins, Arabidopsis thaliana
          Length = 256

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -1

Query: 529 VLTAAW*WEMNTYSKINVDKLVYFRSCDIIEILLNFK--DAELKLTFN 392
           V T AW    N +S++   KL+     D +E L++FK  + EL L++N
Sbjct: 120 VATLAW-LNANNFSRLIECKLIILNELDWLESLMSFKQLEKELPLSWN 166


>At4g27460.1 68417.m03946 CBS domain-containing protein 
          Length = 391

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +3

Query: 255 PINNF*FFKSKYYKELVKFRVSLKKNTKAFCIITIFHSDMCKFFVTLNVSFSS-ASLKLS 431
           PI+   + K K + + V    +   N + FC IT    D+ +F +    +FS   ++ LS
Sbjct: 127 PIHTKPYTKKKQHNDNVSVTTTTHSNGQRFCWIT--QEDIIQFLLGFIAAFSPLPAMSLS 184

Query: 432 NISIIS 449
           ++ +I+
Sbjct: 185 DLGVIN 190


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,394,535
Number of Sequences: 28952
Number of extensions: 225799
Number of successful extensions: 380
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)