Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0885
         (681 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    53   7e-06
UniRef50_A1CUH7 Cluster: SSU processome component Utp10, putativ...    33   6.4  
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    33   8.5  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 52.8 bits (121), Expect = 7e-06
 Identities = 22/22 (100%), Positives = 22/22 (100%)
 Frame = +2

Query: 326 FLLLRWVDELTAHLVLSGYWSP 391
           FLLLRWVDELTAHLVLSGYWSP
Sbjct: 154 FLLLRWVDELTAHLVLSGYWSP 175



 Score = 32.7 bits (71), Expect = 8.5
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +1

Query: 274 RTVCA-VRDNKTKNVLGYFFIA*MGGRAHSPLGVKWLLEPIVIYNVNAPPTLRYKF 438
           +TVC+ +  N  +  L  F +        + L +     P  +Y+VNAPPT RYKF
Sbjct: 136 KTVCSQINANPKRFCLSRFLLLRWVDELTAHLVLSGYWSPRHLYDVNAPPTSRYKF 191


>UniRef50_A1CUH7 Cluster: SSU processome component Utp10, putative;
           n=7; Eurotiomycetidae|Rep: SSU processome component
           Utp10, putative - Aspergillus clavatus
          Length = 1819

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = +1

Query: 238 TIFLEQSLTESLRTVCAVRDNKTKNVLGYFFIA*MGGR-AHSPL--GVKWLLEPIVIYNV 408
           TIF EQS TE  RT  +   NK  +V+   F+A +GGR   SP    V WL+    ++  
Sbjct: 72  TIFSEQSKTED-RTQLSAAQNKELDVVLEAFLALVGGRLLLSPAVKAVDWLIRRFRVHEY 130

Query: 409 NAPPTL 426
           N   T+
Sbjct: 131 NTEFTI 136


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 32.7 bits (71), Expect = 8.5
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +3

Query: 522 WYLPVRIHKRSYHQ 563
           WYLP R HKRSYH+
Sbjct: 572 WYLPARTHKRSYHR 585


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 602,758,821
Number of Sequences: 1657284
Number of extensions: 11264776
Number of successful extensions: 17865
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17864
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52892566912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)