Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0885
         (681 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    29   0.035
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    23   1.8  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   9.3  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 29.1 bits (62), Expect = 0.035
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 492 NAFRFEGRGSRCNYTETLELISQGGWRIYVVDD 394
           N+ ++ G      Y E +EL  +GGW++ V DD
Sbjct: 286 NSGKYTGEAGMLGYNEIVELQKEGGWKV-VWDD 317


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = -1

Query: 567 ITGGRTSCESARVGTINPPILR*SINAFRFEGRGSRCNYTETLELISQGGW 415
           + G   +  SA    +  PI+    +A R+ G      Y E +E  + GGW
Sbjct: 266 VYGRSFTLASASNNKLGAPIVAGG-DAGRYTGERGMMGYNEIVEAQNAGGW 315


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
 Frame = +3

Query: 312 CIRVFFYCLD-GWTSSQPT 365
           CI  F+YC D G+ S   T
Sbjct: 247 CITQFYYCYDSGFNSDNLT 265


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,082
Number of Sequences: 336
Number of extensions: 3212
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)