Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0884
         (678 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IKB6 Cluster: Histone deacetylase, putative; n=4; Alv...    33   4.8  
UniRef50_A0DQK6 Cluster: Chromosome undetermined scaffold_6, who...    33   6.4  
UniRef50_Q7RAL7 Cluster: Similar to ATPase, class II, type 9A; n...    33   8.4  

>UniRef50_Q8IKB6 Cluster: Histone deacetylase, putative; n=4;
           Alveolata|Rep: Histone deacetylase, putative -
           Plasmodium falciparum (isolate 3D7)
          Length = 2251

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = -3

Query: 526 IMSLLYNINXYIAHTMR*RHLCKLCNFSGETLENSTSYYIYVYICNSYIVLL 371
           IM++LYN   YI + ++  H   L + +    EN T+  I +Y C SYI+ L
Sbjct: 29  IMNILYNKINYICYILKSNHRDILNDIN---FENRTAIEICLYYCKSYILFL 77


>UniRef50_A0DQK6 Cluster: Chromosome undetermined scaffold_6, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_6,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 472

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = -1

Query: 591 NGLSCKVAKMSLKPNTFSPFVXXXXXXXXXXXISHIRCDNVTYANYVIFQEKRWKIQHLT 412
           N +  KV K  LK N  S               SH+R D V Y  Y++ + +R+K+  L 
Sbjct: 335 NQVQVKVEKADLKQNQSS---NENYQKEKDQLPSHVRLDQVLYQTYILIRAQRFKVIILQ 391

Query: 411 IYMYIYVI 388
              +I +I
Sbjct: 392 FDFFIQII 399


>UniRef50_Q7RAL7 Cluster: Similar to ATPase, class II, type 9A; n=3;
           Plasmodium (Vinckeia)|Rep: Similar to ATPase, class II,
           type 9A - Plasmodium yoelii yoelii
          Length = 1424

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 388 NYIYIHI-YSKMLNFPTFLLKNYIICISDVIASYV 489
           NY Y +I Y K LN+  F+L N +I  SDVI   +
Sbjct: 455 NYNYYNISYRKKLNYDNFILSNSVITSSDVICMVI 489


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 529,897,109
Number of Sequences: 1657284
Number of extensions: 9322415
Number of successful extensions: 16935
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16925
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)